chr2 : 174,328,111 – 174,328,346
235 bp 56 TFs 3 linked genes
This 235 bp open chromatin element is linked to LINC01305, SP9, and ENSG00000280414 and is bound by 56 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01305 2.1 kb Proximal Proximity
SP9 6.6 kb Proximal Proximity
ENSG00000280414 9.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:174,323,111 – 174,333,346
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
56 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 213 bp overlap
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 235 bp overlap
BCOR 2 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 216 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 235 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 102 bp overlap
BRD2 2 datasets
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 235 bp overlap
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 235 bp overlap
BRD4 3 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 101 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 235 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 235 bp overlap
CBX7 1 dataset
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 235 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 154 bp overlap
CTBP1 1 dataset
ChIP MCF-7 ENCSR636EYA.CTBP1.MCF-7 186 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 235 bp overlap
E2F6 7 datasets
ChIP A-549 ENCSR000BTC.E2F6.A-549 156 bp overlap
ChIP A549 ENCFF550XVR 223 bp overlap
ChIP H1 ENCFF785DWK 156 bp overlap
ChIP K-562 ENCSR000EWJ.E2F6.K-562 235 bp overlap
ChIP K-562 ENCSR000BLI.E2F6.K-562 106 bp overlap
ChIP K562 ENCFF136LTS 64 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 235 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 103 bp overlap
ESR1 2 datasets
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 235 bp overlap
ChIP MCF-7_estradiol-DHT_45min GSE99626.ESR1.MCF-7_estradiol-DHT_45min 91 bp overlap
EZH2 15 datasets
ChIP B cell ENCFF803EMO 235 bp overlap
ChIP GM23338 ENCFF613YON 166 bp overlap
ChIP GM23338 ENCFF886DXX 211 bp overlap
ChIP H1 ENCFF232NZA 235 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 86 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 235 bp overlap
ChIP SK-N-SH ENCFF657FZK 233 bp overlap
ChIP astrocyte ENCFF365JTP 235 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 235 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 235 bp overlap
ChIP hepatocyte ENCFF118DKH 235 bp overlap
ChIP hepatocyte ENCFF552DZB 166 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 136 bp overlap
ChIP neural progenitor cell ENCFF018MKA 235 bp overlap
ChIP neural progenitor cell ENCFF472NFV 235 bp overlap
EZH2_phosphoT487 2 datasets
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 235 bp overlap
ChIP OCI-Ly7 ENCSR565XSL.EZH2_phosphoT487.OCI-Ly7 183 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 129 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 73 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 99 bp overlap
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 101 bp overlap
HNRNPK 1 dataset
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 192 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 213 bp overlap
JARID2 2 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 170 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 235 bp overlap
JUN 1 dataset
ChIP A549 ENCFF846DUV 53 bp overlap
KDM1A 2 datasets
ChIP H1 ENCFF696SGD 235 bp overlap
ChIP H1 ENCFF696SGD 216 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 235 bp overlap
KDM5B 1 dataset
ChIP SUM159 GSE46055.KDM5B.SUM159 176 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 235 bp overlap
KMT2A 1 dataset
ChIP THP-1 GSE83671.KMT2A.THP-1 53 bp overlap
L3MBTL2 2 datasets
ChIP HEK293T ENCFF482NJV 235 bp overlap
ChIP HEK293T ENCSR862PNL.L3MBTL2.HEK293T 152 bp overlap
MAX 2 datasets
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 54 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 126 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 235 bp overlap
PCBP1 1 dataset
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 171 bp overlap
PCBP2 3 datasets
ChIP Hep-G2 ENCSR945NSF.PCBP2.Hep-G2 226 bp overlap
ChIP Hep-G2 GSE120104.PCBP2.Hep-G2 235 bp overlap
ChIP HepG2 ENCFF033VWK 235 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 235 bp overlap
ChIP GM23338 ENCFF333SNB 235 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 235 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 235 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 235 bp overlap
PTBP1 2 datasets
ChIP Hep-G2 GSE120104.PTBP1.Hep-G2 139 bp overlap
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 139 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 235 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 90 bp overlap
RNF2 2 datasets
ChIP HUES-64 GSE104059.RNF2.HUES-64 235 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 235 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 102 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 235 bp overlap
SMARCA4 3 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 57 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 235 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 180 bp overlap
SMARCC1 1 dataset
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 81 bp overlap
SP1 2 datasets
ChIP HEK293 GSE76494.SP1.HEK293 127 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 89 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 120 bp overlap
SRSF1 1 dataset
ChIP Hep-G2 GSE120104.SRSF1.Hep-G2 190 bp overlap
SS18 2 datasets
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 235 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 72 bp overlap
SUZ12 6 datasets
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 235 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 235 bp overlap
ChIP H1 ENCFF881NFR 235 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 235 bp overlap
ChIP NT2/D1 ENCFF574SXS 151 bp overlap
ChIP NT2/D1 ENCFF574SXS 235 bp overlap
TCF12 1 dataset
ChIP A-549 ENCSR000BQQ.TCF12.A-549 116 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 183 bp overlap
TP63 6 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 57 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 100 bp overlap
ChIP TT GSE46837.TP63.TT 93 bp overlap
ChIP foreskin GSE126390.TP63.foreskin 180 bp overlap
ChIP keratinocyte GSE33571.TP63.keratinocyte 64 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 76 bp overlap
TP73_DELTANP 1 dataset
ChIP SaOS-2 GSE15780.TP73_DELTANP.SaOS-2 90 bp overlap
TP73_TA 1 dataset
ChIP SaOS-2 GSE15780.TP73_TA.SaOS-2 58 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 138 bp overlap
ZBTB33 2 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 208 bp overlap
ChIP K562 ENCFF875HLX 235 bp overlap
ZBTB7A 2 datasets
ChIP K-562 GSE103445.ZBTB7A.K-562 86 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 83 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 235 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 235 bp overlap
ZNF398 1 dataset
ChIP H9 GSE133630.ZNF398.H9 235 bp overlap
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