chr2 : 161,246,205 – 161,246,577
372 bp 60 TFs 1 linked gene
This 372 bp open chromatin element is linked to LINC01806 and is bound by 60 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01806 1.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:161,241,205 – 161,251,577
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
ASCL1 4 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 72 bp overlap
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 68 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 206 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 114 bp overlap
ATF4 2 datasets
ChIP K-562 ENCSR145TSJ.ATF4.K-562 271 bp overlap
ChIP K562 ENCFF674KTF 372 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 178 bp overlap
BRD4 6 datasets
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 317 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 228 bp overlap
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 205 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 159 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 264 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 220 bp overlap
CBX7 1 dataset
ChIP hESC GSE133412.CBX7.hESC 249 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 215 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 239 bp overlap
CRX 1 dataset
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 166 bp overlap
CTCF 2 datasets
ChIP HEK293 ENCSR617IFZ.CTCF.HEK293 115 bp overlap
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 83 bp overlap
DACH1 2 datasets
ChIP K-562 ENCSR030TJP.DACH1.K-562 180 bp overlap
ChIP K562 ENCFF574LOW 279 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 196 bp overlap
ERF::FOXI1 1 dataset
Motif DE_60h DE_60h-ERFFOXI1_MA1935.2 10 bp overlap
EZH2 1 dataset
ChIP GM23338 ENCFF613YON 155 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 223 bp overlap
FLI1::FOXI1 1 dataset
Motif DE_60h DE_60h-FLI1FOXI1_MA1950.2 11 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 333 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 303 bp overlap
ChIP DE DE-FOXA2-2 267 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 193 bp overlap
FOXO1-PAX3 1 dataset
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 210 bp overlap
GATA1 7 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 163 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 167 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 145 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 178 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 153 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 372 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 202 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 372 bp overlap
ChIP DE DE-GATA4-2 372 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 372 bp overlap
ChIP DE DE-GATA6-2 372 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 290 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 372 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 218 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 372 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 372 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 336 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 278 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 182 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 200 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 356 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 91 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 246 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 322 bp overlap
MYOD1 2 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 172 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 177 bp overlap
MYOG 3 datasets
ChIP RH4 GSE83726.MYOG.RH4 278 bp overlap
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 221 bp overlap
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 165 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 341 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 226 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 372 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 372 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 304 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 95 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 268 bp overlap
NFIA 1 dataset
Motif DE_60h DE_60h-NFIA_MA0670.2 6 bp overlap
NFIC 3 datasets
Motif DE_60h DE_60h-NFIC_MA0161.3 7 bp overlap
ChIP K-562 ENCSR796ITY.NFIC.K-562 260 bp overlap
ChIP K562 ENCFF167YID 190 bp overlap
NFIX 1 dataset
Motif DE_60h DE_60h-NFIX_MA0671.2 6 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 255 bp overlap
PCGF2 1 dataset
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 246 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 227 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 351 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 194 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 324 bp overlap
RNF2 1 dataset
ChIP HUES-64 GSE104059.RNF2.HUES-64 175 bp overlap
RUNX1 1 dataset
ChIP SKH1_RUNX1-EVI1_KD GSE87283.RUNX1.SKH1_RUNX1-EVI1_KD 144 bp overlap
SIN3A 3 datasets
ChIP H1 ENCFF896IJG 263 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 163 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 174 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 326 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 372 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 297 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 333 bp overlap
SMARCA4 2 datasets
ChIP NSC GSE125033.SMARCA4.NSC 222 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCA4.TTC-549_NoDox 164 bp overlap
SMARCC1 1 dataset
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 353 bp overlap
SOX8 2 datasets
ChIP RH4 GSE116344.SOX8.RH4 227 bp overlap
ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 189 bp overlap
SUPT5H 2 datasets
ChIP HCT-116_DMSO GSE138548.SUPT5H.HCT-116_DMSO 121 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 59 bp overlap
SUPT6H 1 dataset
ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 307 bp overlap
TAL1 2 datasets
ChIP HSPC-CD34pos GSE93372.TAL1.HSPC-CD34pos 92 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 102 bp overlap
TFAP4 1 dataset
ChIP K562 ENCFF727PXG 372 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 136 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 120 bp overlap
ZBTB11 1 dataset
ChIP HEK293 ENCSR882ZTS.ZBTB11.HEK293 174 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 337 bp overlap
ZIM3 1 dataset
Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 249 bp overlap
ZSCAN16 1 dataset
Motif DE_60h DE_60h-ZSCAN16_MA2100.1 18 bp overlap
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