chr2 : 153,474,299 – 153,474,923
624 bp 80 TFs 1 linked gene
This 624 bp open chromatin element is linked to RPRM and is bound by 80 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RPRM 3.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:153,469,299 – 153,479,923
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
80 transcription factors
Source
Cell type
Alx4 1 dataset
Motif DE_60h DE_60h-Alx4_MA0853.2 12 bp overlap
BARX1 1 dataset
Motif DE_60h DE_60h-BARX1_MA0875.2 6 bp overlap
BHLHE22 1 dataset
Motif DE_60h DE_60h-BHLHE22_MA1635.2 6 bp overlap
BRD4 2 datasets
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 226 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 250 bp overlap
BSX 1 dataset
Motif DE_60h DE_60h-BSX_MA0876.2 6 bp overlap
Bhlha15 1 dataset
Motif DE_60h DE_60h-Bhlha15_MA1472.3 8 bp overlap
CEBPA 5 datasets
ChIP THP-1_1-25D_24h GSE124032.CEBPA.THP-1_1-25D_24h 145 bp overlap
ChIP THP-1_1-25D_2h GSE124032.CEBPA.THP-1_1-25D_2h 190 bp overlap
ChIP THP-1_1-25D_8h GSE124032.CEBPA.THP-1_1-25D_8h 232 bp overlap
ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 198 bp overlap
ChIP THP-1_EtOH_8h GSE124032.CEBPA.THP-1_EtOH_8h 191 bp overlap
CEBPB 1 dataset
ChIP THP-1_eGFP-Pam3csk-0h GSE103477.CEBPB.THP-1_eGFP-Pam3csk-0h 248 bp overlap
CHD4 1 dataset
ChIP RH5 GSE155861.CHD4.RH5 205 bp overlap
CRX 1 dataset
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 223 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF460KDD 251 bp overlap
ChIP BLaER1 ENCFF896HSY 265 bp overlap
Crx 1 dataset
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
DLX1 1 dataset
Motif DE_60h DE_60h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_60h DE_60h-DLX6_MA0882.2 6 bp overlap
Dlx3 1 dataset
Motif DE_60h DE_60h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_60h DE_60h-Dlx4_MA0881.2 6 bp overlap
EN2 1 dataset
Motif DE_60h DE_60h-EN2_MA0642.3 7 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 315 bp overlap
ESR1 1 dataset
ChIP T-47D_siFOXA1-IL6 GSE126004.ESR1.T-47D_siFOXA1-IL6 223 bp overlap
EZH2 1 dataset
ChIP A-1847 GSE95643.EZH2.A-1847 210 bp overlap
FEZF2 1 dataset
Motif DE_60h DE_60h-FEZF2_MA2341.1 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 492 bp overlap
ChIP DE DE-FOXA2-2 483 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 530 bp overlap
ChIP DE DE-GATA4-2 596 bp overlap
ChIP foregut GSE117136.GATA4.foregut 352 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 290 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 492 bp overlap
ChIP DE DE-GATA6-2 611 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 326 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 422 bp overlap
GBX1 1 dataset
Motif DE_60h DE_60h-GBX1_MA0889.2 7 bp overlap
GBX2 1 dataset
Motif DE_60h DE_60h-GBX2_MA0890.2 6 bp overlap
GSC 1 dataset
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
Gli1 1 dataset
Motif DE_60h DE_60h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif DE_60h DE_60h-Gli2_MA0734.4 9 bp overlap
HESX1 1 dataset
Motif DE_60h DE_60h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_60h DE_60h-HOXA7_MA1498.3 6 bp overlap
IRF4 2 datasets
ChIP NCI-H929 GSE142493.IRF4.NCI-H929 114 bp overlap
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 114 bp overlap
IRF8 1 dataset
ChIP THP-1 GSE123872.IRF8.THP-1 361 bp overlap
LBX1 1 dataset
Motif DE_60h DE_60h-LBX1_MA0618.2 7 bp overlap
LBX2 1 dataset
Motif DE_60h DE_60h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_60h DE_60h-LHX2_MA0700.3 6 bp overlap
LHX9 1 dataset
Motif DE_60h DE_60h-LHX9_MA0701.3 7 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 191 bp overlap
MSC 1 dataset
Motif DE_60h DE_60h-MSC_MA0665.1 10 bp overlap
MSX1 1 dataset
Motif DE_60h DE_60h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_60h DE_60h-MSX2_MA0708.3 6 bp overlap
MYF5 1 dataset
Motif DE_60h DE_60h-MYF5_MA1641.2 8 bp overlap
Msx3 1 dataset
Motif DE_60h DE_60h-Msx3_MA0709.2 6 bp overlap
NEUROD1 6 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 454 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 353 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 480 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 288 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 358 bp overlap
Motif DE_60h DE_60h-NEUROD1_MA1109.2 8 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 194 bp overlap
Neurod2 2 datasets
Motif DE_60h DE_60h-Neurod2_MA0668.3 8 bp overlap
Motif DE_60h DE_60h-Neurod2_MA1993.2 6 bp overlap
Nobox 1 dataset
Motif DE_60h DE_60h-Nobox_MA0125.2 6 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCFF875BDB 421 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 329 bp overlap
OTX1 1 dataset
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
ChIP retina_pigment GSE60024.OTX2.retina_pigment 159 bp overlap
Olig2 1 dataset
Motif DE_60h DE_60h-Olig2_MA1997.2 6 bp overlap
PITX1 1 dataset
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
POU5F1 1 dataset
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 378 bp overlap
PRRX2 1 dataset
Motif DE_60h DE_60h-PRRX2_MA0075.4 7 bp overlap
Ptf1A 1 dataset
Motif DE_60h DE_60h-Ptf1A_MA1619.2 8 bp overlap
RAD21 2 datasets
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-240m 188 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 199 bp overlap
RAX 1 dataset
Motif DE_60h DE_60h-RAX_MA0718.2 6 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 326 bp overlap
REST 12 datasets
ChIP GM12878 ENCSR000BGF.REST.GM12878 83 bp overlap
ChIP GM12878 ENCSR000BQS.REST.GM12878 170 bp overlap
ChIP H1 ENCFF429RUE 245 bp overlap
ChIP HCT-116 ENCSR000BVI.REST.HCT-116 147 bp overlap
ChIP HEK293 ENCFF073DOT 177 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 365 bp overlap
ChIP HeLa-S3 ENCFF911DTC 70 bp overlap
ChIP HeLa-S3 ENCSR000BMN.REST.HeLa-S3 218 bp overlap
ChIP Ishikawa ENCFF456OHV 401 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 222 bp overlap
ChIP MCF-7 ENCSR000BSP.REST.MCF-7 156 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 205 bp overlap
RHOXF1 1 dataset
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
RUNX1_mut 1 dataset
ChIP CD34 GSE111917.RUNX1_mut.CD34 133 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 496 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 330 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 261 bp overlap
SMARCA4 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 290 bp overlap
SPI1 16 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 279 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 189 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 174 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 239 bp overlap
ChIP DC_LPS GSE123347.SPI1.DC_LPS 106 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 287 bp overlap
ChIP GM12878 ENCFF134LCP 176 bp overlap
ChIP GM12891 ENCFF563IUT 103 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 227 bp overlap
ChIP NB4 GSE128834.SPI1.NB4 257 bp overlap
ChIP NCI-H929 GSE56857.SPI1.NCI-H929 156 bp overlap
ChIP RS4-11_DEX GSE71616.SPI1.RS4-11_DEX 182 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 198 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 233 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 192 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 167 bp overlap
STAT3 1 dataset
ChIP monocyte_IL10 GSE120943.STAT3.monocyte_IL10 215 bp overlap
SUZ12 1 dataset
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 52 bp overlap
Six3 1 dataset
Motif DE_60h DE_60h-Six3_MA0631.2 11 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TAL1::TCF3 1 dataset
Motif DE_60h DE_60h-TAL1TCF3_MA0091.2 10 bp overlap
TFAP4 1 dataset
Motif DE_60h DE_60h-TFAP4_MA0691.1 10 bp overlap
Tcf12 1 dataset
Motif DE_60h DE_60h-Tcf12_MA0521.3 6 bp overlap
Tcf21 1 dataset
Motif DE_60h DE_60h-Tcf21_MA0832.2 10 bp overlap
Twist2 1 dataset
Motif DE_60h DE_60h-Twist2_MA0633.3 6 bp overlap
ZNF213 1 dataset
Motif DE_60h DE_60h-ZNF213_MA2121.1 12 bp overlap
ZNF322 1 dataset
ChIP HEK293 GSE76494.ZNF322.HEK293 136 bp overlap
ZNF354C 1 dataset
Motif DE_60h DE_60h-ZNF354C_MA0130.1 6 bp overlap
Zic2 1 dataset
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
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