chr1 : 4,653,349 – 4,653,557
208 bp 59 TFs 1 linked gene
This 208 bp open chromatin element is linked to AJAP1 and is bound by 59 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
AJAP1 1.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:4,648,349 – 4,658,557
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
ASCL1 2 datasets
Motif DE_12h DE_12h-ASCL1_MA1100.3 8 bp overlap
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 192 bp overlap
BRD2 1 dataset
ChIP NCI-H23 GSE104481.BRD2.NCI-H23 72 bp overlap
CTCF 6 datasets
ChIP VCaP ENCSR265ARE.CTCF.VCaP 97 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 103 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 166 bp overlap
ChIP erythroid GSE67783.CTCF.erythroid 208 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 163 bp overlap
ChIP retina_AB1-FW16 GSE86981.CTCF.retina_AB1-FW16 94 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 208 bp overlap
EZH2 10 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 208 bp overlap
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 121 bp overlap
ChIP H1 ENCFF232NZA 195 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 117 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 208 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 208 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 158 bp overlap
ChIP neural progenitor cell ENCFF018MKA 99 bp overlap
ChIP neural progenitor cell ENCFF018MKA 99 bp overlap
ChIP neural progenitor cell ENCFF472NFV 208 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 196 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
HNF4A 2 datasets
ChIP GP5D GSE51234.HNF4A.GP5D 208 bp overlap
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 174 bp overlap
JARID2 1 dataset
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 82 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 66 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 50 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 208 bp overlap
KLF1 1 dataset
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF12 1 dataset
Motif DE_12h DE_12h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF15 1 dataset
Motif DE_12h DE_12h-KLF15_MA1513.2 8 bp overlap
KLF16 1 dataset
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
KLF2 1 dataset
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
KLF7 1 dataset
Motif DE_12h DE_12h-KLF7_MA1959.2 8 bp overlap
MBD3 1 dataset
ChIP MCF-7 GSE44737.MBD3.MCF-7 62 bp overlap
MED1 3 datasets
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 199 bp overlap
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 175 bp overlap
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 103 bp overlap
NFE2L2 1 dataset
ChIP A-549 GSE113497.NFE2L2.A-549 138 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 153 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PCBP1 1 dataset
ChIP HepG2 ENCFF604TPT 50 bp overlap
POLR2A 1 dataset
ChIP lower leg skin ENCFF687RJC 87 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 208 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 127 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 173 bp overlap
RAD21 1 dataset
ChIP HCT-116 GSE131606.RAD21.HCT-116 208 bp overlap
RNF2 2 datasets
ChIP WA01 ENCSR784VUY.RNF2.WA01 208 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 208 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 148 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 208 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 52 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 172 bp overlap
SMARCC1 2 datasets
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 208 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 158 bp overlap
SMC1 2 datasets
ChIP DKO GSE131606.SMC1.DKO 208 bp overlap
ChIP HCT-116 GSE131606.SMC1.HCT-116 51 bp overlap
SNAI1 1 dataset
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
SNAI2 1 dataset
Motif DE_12h DE_12h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap
SP1 1 dataset
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
SP2 1 dataset
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
SP3 1 dataset
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SS18 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 58 bp overlap
SUZ12 1 dataset
ChIP H1 ENCFF881NFR 201 bp overlap
TCF12 2 datasets
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 163 bp overlap
TCF3 1 dataset
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 144 bp overlap
TFAP2C 2 datasets
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 154 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 208 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 173 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 109 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 208 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZNF211 1 dataset
Motif DE_12h DE_12h-ZNF211_MA1974.2 10 bp overlap
ZNF331 1 dataset
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
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