chr2 : 95,297,045 – 95,297,447
402 bp 52 TFs 1 linked gene
This 402 bp open chromatin element is linked to KCNIP3 and is bound by 52 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
KCNIP3 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:95,292,045 – 95,302,447
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
52 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 305 bp overlap
ARNT 1 dataset
ChIP MCF-7_Ctrl GSE85352.ARNT.MCF-7_Ctrl 264 bp overlap
ASCL1 4 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 112 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 117 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 153 bp overlap
ChIP SCLC_ASCLP_NE GSE61197.ASCL1.SCLC_ASCLP_NE 145 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 350 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 262 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 190 bp overlap
BRD4 14 datasets
ChIP DND41 GSE54379.BRD4.DND41 194 bp overlap
ChIP DND41_E GSE54379.BRD4.DND41_E 364 bp overlap
ChIP Jurkat GSE83777.BRD4.Jurkat 402 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 310 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 177 bp overlap
ChIP LNCaP-C4-2_F133V_JQ1 GSE88871.BRD4.LNCaP-C4-2_F133V_JQ1 230 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 278 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 274 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 214 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 246 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 143 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 228 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 402 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 236 bp overlap
CDK7 1 dataset
ChIP Jurkat_DMSO GSE60027.CDK7.Jurkat_DMSO 176 bp overlap
CDK8 3 datasets
ChIP monocyte_IFNg GSE120943.CDK8.monocyte_IFNg 134 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.CDK8.monocyte_IFNg-LPS 138 bp overlap
ChIP monocyte_resting GSE120943.CDK8.monocyte_resting 62 bp overlap
CEBPB 3 datasets
ChIP monocyte GSE98367.CEBPB.monocyte 157 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.CEBPB.monocyte_IFNg-LPS 154 bp overlap
ChIP monocyte_INFg GSE98367.CEBPB.monocyte_INFg 156 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 180 bp overlap
CLOCK 1 dataset
ChIP BA10_2 GSE96659.CLOCK.BA10_2 160 bp overlap
CREB1 3 datasets
ChIP LNCaP-abl GSE63034.CREB1.LNCaP-abl 171 bp overlap
ChIP LNCaP-abl_SHCTR GSE63034.CREB1.LNCaP-abl_SHCTR 286 bp overlap
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 250 bp overlap
CREBBP_M768 1 dataset
ChIP NCI-H3396_E2 GSE32349.CREBBP_M768.NCI-H3396_E2 96 bp overlap
CTCF 9 datasets
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 305 bp overlap
ChIP thyroid gland ENCFF204HWS 320 bp overlap
ChIP thyroid gland ENCFF300RYK 336 bp overlap
ChIP thyroid gland ENCFF631QRY 372 bp overlap
ChIP thyroid-gland ENCSR145HBC.CTCF.thyroid-gland 330 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 293 bp overlap
ChIP thyroid-gland ENCSR744YJR.CTCF.thyroid-gland 163 bp overlap
ChIP thyroid-gland ENCSR955BIB.CTCF.thyroid-gland 292 bp overlap
ChIP thyroid-gland ENCSR492ZIW.CTCF.thyroid-gland 257 bp overlap
ESR1 5 datasets
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 173 bp overlap
ChIP breast_tumor_Male_11 GSE104399.ESR1.breast_tumor_Male_11 63 bp overlap
ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 144 bp overlap
ChIP breast_tumor_Male_21 GSE104399.ESR1.breast_tumor_Male_21 247 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 192 bp overlap
EZH2 3 datasets
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 307 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 402 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 206 bp overlap
FOXA1 18 datasets
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 351 bp overlap
ChIP 22Rv1_CST GSE123618.FOXA1.22Rv1_CST 177 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 207 bp overlap
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 189 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 224 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 224 bp overlap
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 175 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 203 bp overlap
ChIP LNCaP_GSK GSE148926.FOXA1.LNCaP_GSK 189 bp overlap
ChIP LNCaP_S2101-48H GSE114266.FOXA1.LNCaP_S2101-48H 215 bp overlap
ChIP LNCaP_S2101-4H GSE114266.FOXA1.LNCaP_S2101-4H 250 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 108 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 214 bp overlap
ChIP MCF-7_E2 GSE59530.FOXA1.MCF-7_E2 134 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 194 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 164 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 223 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 326 bp overlap
GABPA 2 datasets
ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 189 bp overlap
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 174 bp overlap
GATA3 2 datasets
ChIP Jurkat GSE76181.GATA3.Jurkat 139 bp overlap
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 367 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 183 bp overlap
KLF5 1 dataset
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 293 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 249 bp overlap
KMT2A 2 datasets
ChIP MOLM-13 GSE114981.KMT2A.MOLM-13 167 bp overlap
ChIP MOLM-13_CBS79-KO-VP-HOTTIP GSE114981.KMT2A.MOLM-13_CBS79-KO-VP-HOTTIP 265 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 246 bp overlap
MAF 2 datasets
ChIP monocyte GSE98367.MAF.monocyte 153 bp overlap
ChIP monocyte_INFg GSE98367.MAF.monocyte_INFg 148 bp overlap
MAX 4 datasets
ChIP MCF-7 ENCSR000BUL.MAX.MCF-7 104 bp overlap
ChIP NCI-H128 GSE41105.MAX.NCI-H128 184 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 402 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 325 bp overlap
MAZ 1 dataset
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 290 bp overlap
MED1 1 dataset
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 207 bp overlap
MYB 3 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 250 bp overlap
ChIP Loucy GSE94000.MYB.Loucy 296 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 139 bp overlap
MYC 3 datasets
ChIP LNCaP GSE117430.MYC.LNCaP 187 bp overlap
ChIP NCI-H128 GSE41105.MYC.NCI-H128 169 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 338 bp overlap
MYCN 3 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 270 bp overlap
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 402 bp overlap
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 311 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 217 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 117 bp overlap
NR3C1 1 dataset
ChIP breast_tumor_Male_21 GSE104399.NR3C1.breast_tumor_Male_21 221 bp overlap
PCBP1 1 dataset
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 134 bp overlap
POLR2A 5 datasets
ChIP body of pancreas ENCFF675RCN 289 bp overlap
ChIP body of pancreas ENCFF727UBE 223 bp overlap
ChIP prostate gland ENCFF832RQK 252 bp overlap
ChIP prostate gland ENCFF881OMH 205 bp overlap
ChIP thyroid gland ENCFF979LRR 280 bp overlap
SMAD3 1 dataset
ChIP H69_5TGF GSE145250.SMAD3.H69_5TGF 115 bp overlap
SMARCA4 1 dataset
ChIP J-Lat_GFP-Clone-A72_DMSO GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_DMSO 168 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 160 bp overlap
SMC1 1 dataset
ChIP monocyte_IFNg-LPS GSE120943.SMC1.monocyte_IFNg-LPS 203 bp overlap
SMC1A 1 dataset
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 216 bp overlap
SP1 1 dataset
ChIP HEK293 GSE76494.SP1.HEK293 167 bp overlap
SP3 1 dataset
ChIP HEK293 ENCSR141PZA.SP3.HEK293 247 bp overlap
STAT3 5 datasets
ChIP monocyte_IFNg GSE120943.STAT3.monocyte_IFNg 159 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.STAT3.monocyte_IFNg-LPS 222 bp overlap
ChIP monocyte_IL10 GSE120943.STAT3.monocyte_IL10 232 bp overlap
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 152 bp overlap
ChIP monocyte_resting GSE120943.STAT3.monocyte_resting 222 bp overlap
SUZ12 4 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 402 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 62 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 264 bp overlap
ChIP MCF-7 ENCSR757EMK.SUZ12.MCF-7 211 bp overlap
ZBTB48 1 dataset
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 274 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 255 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 383 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 379 bp overlap
ZNF444 1 dataset
ChIP MCF-7 ENCSR038XIA.ZNF444.MCF-7 269 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 330 bp overlap
ZNF512B 1 dataset
ChIP MCF-7 ENCSR761LRR.ZNF512B.MCF-7 231 bp overlap
ZNF534 2 datasets
ChIP HEK293T GSE78099.ZNF534.HEK293T 72 bp overlap
ChIP HEK293T GSE78099.ZNF534.HEK293T 136 bp overlap
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