chr2 : 60,476,691 – 60,477,254
563 bp 51 TFs 1 linked gene
This 563 bp open chromatin element is linked to BCL11A and is bound by 51 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
BCL11A 7.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:60,471,691 – 60,482,254
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
51 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_Bag-1L_WT_DHT GSE89938.AR.LNCaP_Bag-1L_WT_DHT 158 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 282 bp overlap
BCL11A 1 dataset
ChIP WA01 ENCSR000BIP.BCL11A.WA01 102 bp overlap
BCL6B 2 datasets
ChIP HEK293 ENCFF555YRB 140 bp overlap
ChIP HEK293 ENCSR673SGK.BCL6B.HEK293 149 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 239 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 274 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 248 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 520 bp overlap
BRD4 2 datasets
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 401 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 210 bp overlap
CDX2 1 dataset
ChIP LS180 GSE31939.CDX2.LS180 66 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 428 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 166 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 323 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 153 bp overlap
ESRRA 2 datasets
ChIP SK-BR-3_EGF GSE81651.ESRRA.SK-BR-3_EGF 93 bp overlap
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 99 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 116 bp overlap
EZH2 1 dataset
ChIP PC-9 ENCSR793USK.EZH2.PC-9 563 bp overlap
EZH2_phosphoT487 1 dataset
ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 563 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 225 bp overlap
FOXA1 9 datasets
ChIP LAPC-4_CST_DHT GSE123618.FOXA1.LAPC-4_CST_DHT 209 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 111 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 183 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 224 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 199 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 167 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 194 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 215 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 150 bp overlap
FOXA2 3 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 104 bp overlap
ChIP DE DE-FOXA2-1 392 bp overlap
ChIP DE DE-FOXA2-2 401 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 485 bp overlap
ChIP DE DE-GATA4-2 472 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 190 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 139 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 544 bp overlap
ChIP DE DE-GATA6-2 563 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 563 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 563 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 563 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 362 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 563 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 563 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 137 bp overlap
HNF1A 2 datasets
ChIP HEE_1 GSE76376.HNF1A.HEE_1 173 bp overlap
ChIP HEE_5 GSE76376.HNF1A.HEE_5 126 bp overlap
HNF1B 1 dataset
ChIP foregut GSE117136.HNF1B.foregut 254 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 204 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 421 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 278 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 362 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 241 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 231 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 188 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 244 bp overlap
ChIP H1 ENCFF747ZPQ 181 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 563 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 526 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 209 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 563 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 462 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 419 bp overlap
ChIP hESC GSE20650.NANOG.hESC 104 bp overlap
ChIP hESC GSE18292.NANOG.hESC 222 bp overlap
NCOR2 1 dataset
ChIP LS180_125 GSE39277.NCOR2.LS180_125 88 bp overlap
NIPBL 5 datasets
ChIP WA09 GSE105028.NIPBL.WA09 293 bp overlap
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 276 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 184 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 260 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 211 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 150 bp overlap
NR4A1 1 dataset
ChIP MOLM-14_DHE GSE124963.NR4A1.MOLM-14_DHE 170 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 283 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 239 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 155 bp overlap
PDX1 2 datasets
ChIP hESC GSE58685.PDX1.hESC 135 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 390 bp overlap
POU5F1 6 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 563 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 550 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 337 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 192 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 198 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 466 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCFF283AJL 152 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 236 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 219 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 222 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 306 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 451 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 563 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 563 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 563 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 563 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 563 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 422 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 276 bp overlap
SMARCA4 4 datasets
ChIP WA09 GSE105028.SMARCA4.WA09 160 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 179 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 271 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 339 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 463 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 370 bp overlap
SMARCC1 4 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 206 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 476 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 306 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 518 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 250 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 214 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 165 bp overlap
STAT3 2 datasets
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 131 bp overlap
ChIP MDA-MB-468_EtOH GSE85579.STAT3.MDA-MB-468_EtOH 76 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 259 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 184 bp overlap
TCF7L2 1 dataset
ChIP HEK293 ENCFF513JQN 317 bp overlap
TLE3 1 dataset
ChIP LNCaP GSE94682.TLE3.LNCaP 202 bp overlap
TP53 2 datasets
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 563 bp overlap
ChIP H9_mesoderm GSE142050.TP53.H9_mesoderm 262 bp overlap
ZMIZ1 1 dataset
ChIP THP-6_shEts1 GSE138516.ZMIZ1.THP-6_shEts1 205 bp overlap
ZNF143 1 dataset
ChIP WA09 GSE105028.ZNF143.WA09 151 bp overlap
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