chr2 : 45,176,462 – 45,176,750
288 bp 50 TFs 1 linked gene
This 288 bp open chromatin element is linked to ENSG00000286728 and is bound by 50 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000286728 6.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:45,171,462 – 45,181,750
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
50 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP 12Z GSE129781.ARID1A.12Z 288 bp overlap
BRD2 1 dataset
ChIP SUM159PT_DMSO GSE131097.BRD2.SUM159PT_DMSO 271 bp overlap
BRD4 8 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 288 bp overlap
ChIP HCC1395_JQ1 GSE63581.BRD4.HCC1395_JQ1 203 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 271 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 271 bp overlap
ChIP SUM1315_DMSO GSE63581.BRD4.SUM1315_DMSO 288 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 68 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 106 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 288 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 150 bp overlap
CEBPB 1 dataset
ChIP HeLa-S3 ENCFF722WEG 190 bp overlap
CHD2 2 datasets
ChIP HeLa-S3 ENCFF078QRQ 281 bp overlap
ChIP HeLa-S3 ENCSR000ECP.CHD2.HeLa-S3 205 bp overlap
CTCF 1 dataset
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 98 bp overlap
DEK 1 dataset
ChIP HeLa-S3 ENCSR219MKK.DEK.HeLa-S3 156 bp overlap
DUX4 1 dataset
ChIP HEK293 GSE75791.DUX4.HEK293 217 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 218 bp overlap
ELF3 2 datasets
ChIP PDAC GSE64557.ELF3.PDAC 264 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 288 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 174 bp overlap
EP300 4 datasets
ChIP HeLa-S3 ENCFF089VPQ 230 bp overlap
ChIP HeLa-S3 ENCFF245KNK 237 bp overlap
ChIP HeLa-S3 ENCSR000ECV.EP300.HeLa-S3 199 bp overlap
ChIP HeLa-S3 ENCSR680OFU.EP300.HeLa-S3 211 bp overlap
ERG 1 dataset
ChIP RWPE-1 GSE114241.ERG.RWPE-1 204 bp overlap
FOS 1 dataset
ChIP HeLa-S3 ENCSR000EZE.FOS.HeLa-S3 151 bp overlap
FOXA1 3 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 122 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 138 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 288 bp overlap
FOXA2 2 datasets
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 264 bp overlap
ChIP DE DE-FOXA2-1 203 bp overlap
GATA4 6 datasets
ChIP A-549 GSE85002.GATA4.A-549 154 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 105 bp overlap
ChIP DE DE-GATA4-1 214 bp overlap
ChIP DE DE-GATA4-2 237 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 228 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 288 bp overlap
GATA6 13 datasets
ChIP AGS GSE51705.GATA6.AGS 210 bp overlap
ChIP DE DE-GATA6-1 288 bp overlap
ChIP DE DE-GATA6-2 254 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 288 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 288 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 288 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 288 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 288 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 288 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 240 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 219 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 219 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 215 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B GSE145834.HIF1A.BEAS-2B 192 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 285 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 288 bp overlap
JUN 8 datasets
ChIP 786-O GSE86092.JUN.786-O 181 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 288 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 224 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 288 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 288 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 288 bp overlap
ChIP HeLa-S3 ENCFF668QVP 274 bp overlap
ChIP HeLa-S3 ENCSR000EDG.JUN.HeLa-S3 161 bp overlap
JUND 2 datasets
ChIP HeLa-S3 ENCFF642OHL 259 bp overlap
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 200 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 208 bp overlap
KLF4 3 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 120 bp overlap
ChIP PDAC GSE64557.KLF4.PDAC 288 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 170 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 288 bp overlap
MED1 2 datasets
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 288 bp overlap
ChIP hMSC-TERT4_osteoblast-D1 GSE113253.MED1.hMSC-TERT4_osteoblast-D1 155 bp overlap
MGA 1 dataset
ChIP A-549_MGA-OE GSE112188.MGA.A-549_MGA-OE 222 bp overlap
MZF1 2 datasets
ChIP HEK293 ENCFF683ZWN 272 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 267 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 157 bp overlap
NKX2-1 1 dataset
ChIP NCI-H2087 GSE39998.NKX2-1.NCI-H2087 176 bp overlap
NR3C1 4 datasets
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 228 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 278 bp overlap
ChIP BEAS-2B_shNR3C1_TNF_IA1 GSE125623.NR3C1.BEAS-2B_shNR3C1_TNF_IA1 228 bp overlap
ChIP BEAS-2B_shNR3C1_Veh_IA1 GSE125623.NR3C1.BEAS-2B_shNR3C1_Veh_IA1 232 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 198 bp overlap
RAD21 2 datasets
ChIP HeLa-S3 ENCFF775CHI 231 bp overlap
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 156 bp overlap
RBPJ 1 dataset
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 167 bp overlap
RCOR1 1 dataset
ChIP HeLa-S3 ENCSR000ECM.RCOR1.HeLa-S3 185 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 167 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 243 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 161 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 187 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 159 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 251 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 285 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 237 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 288 bp overlap
SMARCA4 2 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 61 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 53 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 266 bp overlap
STAT3 4 datasets
ChIP HeLa-S3 ENCFF655DGU 218 bp overlap
ChIP HeLa-S3 ENCSR000EDC.STAT3.HeLa-S3 129 bp overlap
ChIP MDA-MB-231 GSE152203.STAT3.MDA-MB-231 237 bp overlap
ChIP MDA-MB-231_EtOH GSE85579.STAT3.MDA-MB-231_EtOH 196 bp overlap
TBP 1 dataset
ChIP HeLa-S3 ENCSR000EDD.TBP.HeLa-S3 180 bp overlap
TCF7L2 6 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 145 bp overlap
ChIP HeLa-S3 ENCFF084KRL 288 bp overlap
ChIP HeLa-S3 ENCFF084KRL 223 bp overlap
ChIP HeLa-S3 ENCFF673QAB 105 bp overlap
ChIP HeLa-S3 ENCSR000EVE.TCF7L2.HeLa-S3 273 bp overlap
ChIP HeLa-S3 ENCSR000EVF.TCF7L2.HeLa-S3 183 bp overlap
ZMYND8 1 dataset
ChIP MDA-MB-231 GSE108833.ZMYND8.MDA-MB-231 155 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 86 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 136 bp overlap
ZNF770 1 dataset
ChIP HEK293 GSE76494.ZNF770.HEK293 211 bp overlap
Huangfu Lab · Publications · Resources · Contact