chrX : 140,509,552 – 140,510,579
1,027 bp 52 TFs 1 linked gene
This 1.0 kb open chromatin element is linked to SOX3 and is bound by 52 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SOX3 4.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:140,504,552 – 140,515,579
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
52 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 707 bp overlap
BACH1 1 dataset
ChIP WA01 ENCSR000EBQ.BACH1.WA01 115 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 642 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 155 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 204 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 1027 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 282 bp overlap
BRD4 1 dataset
ChIP HUVEC-C GSE60171.BRD4.HUVEC-C 180 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 301 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 597 bp overlap
CTCF 68 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 307 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 186 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 180 bp overlap
ChIP A-549 ENCSR000DNA.CTCF.A-549 137 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 101 bp overlap
ChIP GM23338 ENCFF531QOI 189 bp overlap
ChIP GM23338 ENCFF772DML 155 bp overlap
ChIP GM23338 ENCFF832KWE 455 bp overlap
ChIP GP5D_SIRAD21 GSE51234.CTCF.GP5D_SIRAD21 277 bp overlap
ChIP H1 ENCFF414GZI 151 bp overlap
ChIP H1 ENCFF764RHO 189 bp overlap
ChIP H9 ENCFF152GTF 244 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 164 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 150 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 142 bp overlap
ChIP HEK293 ENCFF498RMM 217 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 125 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 202 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 165 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 119 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 107 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 112 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 126 bp overlap
ChIP MCF-7 ENCFF844STM 139 bp overlap
ChIP MCF-7 ENCFF954TUV 156 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 106 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 194 bp overlap
ChIP MCF-7_TAM ERP000380.CTCF.MCF-7_TAM 112 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 99 bp overlap
ChIP PC-3 ENCFF487TUI 311 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 244 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 230 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 101 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 133 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 140 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 140 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 117 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 153 bp overlap
ChIP astrocyte of the cerebellum ENCFF511OCS 233 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 223 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 146 bp overlap
ChIP endodermal cell ENCFF471YCZ 221 bp overlap
ChIP endothelial cell ENCFF663LIE 386 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 165 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 133 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 338 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 179 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 425 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 205 bp overlap
ChIP hESC_PRIMED GSE69646.CTCF.hESC_PRIMED 165 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 129 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 126 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 128 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 157 bp overlap
ChIP hiPSC_IID12 GSE106870.CTCF.hiPSC_IID12 118 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 99 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 193 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 182 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 153 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 164 bp overlap
ChIP nephron progenitor cell ENCFF455DMI 327 bp overlap
ChIP neural crest cell ENCFF182LWK 130 bp overlap
ChIP neural progenitor cell ENCFF420RBO 170 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 201 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 139 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 132 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 161 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 101 bp overlap
CTCFL 1 dataset
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 148 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 346 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 598 bp overlap
ESR1 28 datasets
ChIP MCF-7 GSE45822.ESR1.MCF-7 276 bp overlap
ChIP MCF-7 GSE76893.ESR1.MCF-7 279 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 206 bp overlap
ChIP MCF-7_E2 GSE60270.ESR1.MCF-7_E2 280 bp overlap
ChIP MCF-7_E2 GSE71276.ESR1.MCF-7_E2 221 bp overlap
ChIP MCF-7_E2 GSE59530.ESR1.MCF-7_E2 236 bp overlap
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 176 bp overlap
ChIP MCF-7_E2 GSE117941.ESR1.MCF-7_E2 286 bp overlap
ChIP MCF-7_E2 ERP000380.ESR1.MCF-7_E2 185 bp overlap
ChIP MCF-7_E2-10min-ERalpha GSE94023.ESR1.MCF-7_E2-10min-ERalpha 168 bp overlap
ChIP MCF-7_E2-20min-ERalpha GSE94023.ESR1.MCF-7_E2-20min-ERalpha 185 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 182 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 155 bp overlap
ChIP MCF-7_E2_40M GSE54855.ESR1.MCF-7_E2_40M 260 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 214 bp overlap
ChIP MCF-7_E2_TNF GSE59530.ESR1.MCF-7_E2_TNF 293 bp overlap
ChIP MCF-7_GLYC ERP002305.ESR1.MCF-7_GLYC 213 bp overlap
ChIP MCF-7_SHCRT_E2 ERP000380.ESR1.MCF-7_SHCRT_E2 129 bp overlap
ChIP MCF-7_SHCTR_E2_TNF GSE59530.ESR1.MCF-7_SHCTR_E2_TNF 319 bp overlap
ChIP MCF-7_SHFOXA1_E2_TNF GSE59530.ESR1.MCF-7_SHFOXA1_E2_TNF 184 bp overlap
ChIP MCF-7_SICTR_E2 GSE40129.ESR1.MCF-7_SICTR_E2 118 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 275 bp overlap
ChIP MCF-7_estradiol-Dex_4h GSE99626.ESR1.MCF-7_estradiol-Dex_4h 202 bp overlap
ChIP MCF-7_estradiol-aldosterone_4h GSE99626.ESR1.MCF-7_estradiol-aldosterone_4h 169 bp overlap
ChIP MCF-7_estradiol-progesterone_4h GSE99626.ESR1.MCF-7_estradiol-progesterone_4h 215 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 96 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 229 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 242 bp overlap
ESR1_Y537N 2 datasets
ChIP MCF-7_dox GSE94493.ESR1_Y537N.MCF-7_dox 143 bp overlap
ChIP MCF-7_dox_E2 GSE94493.ESR1_Y537N.MCF-7_dox_E2 164 bp overlap
EZH2 16 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 762 bp overlap
ChIP A-673 ENCSR179SAO.EZH2.A-673 807 bp overlap
ChIP A673 ENCFF955JRZ 637 bp overlap
ChIP A673 ENCFF955JRZ 637 bp overlap
ChIP GM23248 ENCFF404ZHM 267 bp overlap
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 407 bp overlap
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 549 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 336 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 703 bp overlap
ChIP fibroblast of lung ENCFF479BAW 445 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 1007 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 664 bp overlap
ChIP hepatocyte ENCFF552DZB 697 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 275 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 223 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 400 bp overlap
EZH2_phosphoT487 2 datasets
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 264 bp overlap
ChIP SK-N-SH ENCSR297MUV.EZH2_phosphoT487.SK-N-SH 418 bp overlap
FOXA1 2 datasets
ChIP MCF-7_DOX-neg GSE124654.FOXA1.MCF-7_DOX-neg 52 bp overlap
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 285 bp overlap
GATA6 3 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 413 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 249 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 382 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 471 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 181 bp overlap
JARID2 4 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 563 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 145 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 831 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 265 bp overlap
JUN 6 datasets
ChIP DE_D1 S13-DE-d1-JUN-exp1 369 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 382 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 610 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 700 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 787 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 495 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 348 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 343 bp overlap
NFIC 1 dataset
ChIP K562 ENCFF167YID 65 bp overlap
NKX2-1 2 datasets
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 212 bp overlap
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 93 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 300 bp overlap
PAX6 1 dataset
ChIP retina_pigment GSE60024.PAX6.retina_pigment 222 bp overlap
PCGF2 1 dataset
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 327 bp overlap
POLR2A 2 datasets
ChIP sigmoid colon ENCFF748YVT 198 bp overlap
ChIP transverse colon ENCFF607LKE 371 bp overlap
POU5F1 6 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 451 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 601 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 529 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 178 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 290 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 148 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 284 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 230 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF698EWO 194 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 87 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 209 bp overlap
RING1 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.RING1.SYO-1_shRING1A-B 487 bp overlap
RNF2 5 datasets
ChIP NCCIT GSE71675.RNF2.NCCIT 301 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 244 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 552 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 300 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 1002 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 677 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 347 bp overlap
SMARCA4 3 datasets
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 85 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 419 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 63 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 635 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 285 bp overlap
SMARCC1 5 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 182 bp overlap
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 410 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 83 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 393 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 453 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
SS18 4 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 327 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 787 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 660 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 281 bp overlap
SS18-SSX 2 datasets
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 335 bp overlap
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 239 bp overlap
STAT3 1 dataset
ChIP HCC1187 GSE152203.STAT3.HCC1187 157 bp overlap
SUZ12 2 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 315 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 694 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 406 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 141 bp overlap
VDR 1 dataset
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 84 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 158 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 318 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 145 bp overlap
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