chrX : 123,864,842 123,865,356
514 bp 63 TFs 3 linked genes
This 514 bp open chromatin element is linked to XIAP, STAG2, and THOC2 and is bound by 63 transcription factors.
Linked Genes
3 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
XIAP 5.0 kb Proximal Proximity
STAG2 95.6 kb Distal Multiome
THOC2 132.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:123,859,842 – 123,870,356
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
63 transcription factors
Source
Cell type
AR 8 datasets
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 117 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 183 bp overlap
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 157 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 280 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 177 bp overlap
ChIP VCaP_shCt GSE110655.AR.VCaP_shCt 303 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 294 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.AR.prostate-cancer_PDX_167 123 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 166 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 270 bp overlap
CDC5L 1 dataset
ChIP K562 ENCFF644OMA 103 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 323 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 236 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 426 bp overlap
CTCF 3 datasets
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 347 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 288 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 289 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 134 bp overlap
Crx 1 dataset
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 381 bp overlap
ERG 1 dataset
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 269 bp overlap
FOXA1 2 datasets
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 107 bp overlap
ChIP prostate_tumor_tissue3 GSE114385.FOXA1.prostate_tumor_tissue3 330 bp overlap
FOXA2 3 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 274 bp overlap
ChIP DE DE-FOXA2-1 514 bp overlap
ChIP DE DE-FOXA2-2 514 bp overlap
GATA1 2 datasets
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 151 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 182 bp overlap
GATA2 1 dataset
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 236 bp overlap
GATA3 3 datasets
ChIP MCF-7 GSE133072.GATA3.MCF-7 194 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 226 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 238 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 514 bp overlap
ChIP DE DE-GATA4-2 514 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 471 bp overlap
ChIP foregut GSE117136.GATA4.foregut 378 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 373 bp overlap
GATA6 15 datasets
ChIP AGS GSE51705.GATA6.AGS 260 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 291 bp overlap
ChIP DE DE-GATA6-1 496 bp overlap
ChIP DE DE-GATA6-2 514 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 431 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 509 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 433 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 514 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 514 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 425 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 140 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 487 bp overlap
ChIP foregut GSE117136.GATA6.foregut 427 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 259 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 236 bp overlap
GSC 1 dataset
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 205 bp overlap
HIC1 1 dataset
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 85 bp overlap
HOXB13 2 datasets
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 76 bp overlap
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 191 bp overlap
MEF2D 2 datasets
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 290 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 282 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 268 bp overlap
NCOA1 1 dataset
ChIP K-562 ENCSR711SNW.NCOA1.K-562 220 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 231 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 272 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 170 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 306 bp overlap
NR1D1 1 dataset
Motif DE_48h DE_48h-NR1D1_MA1531.2 14 bp overlap
Nr2F6 1 dataset
Motif DE_48h DE_48h-Nr2F6_MA0728.1 15 bp overlap
OTX1 1 dataset
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
Motif DE_48h DE_48h-OTX2_MA0712.3 7 bp overlap
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 385 bp overlap
PGR 1 dataset
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 211 bp overlap
PITX1 1 dataset
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
POLR2A 2 datasets
ChIP HepG2 ENCFF252NAR 231 bp overlap
ChIP HepG2 ENCFF252NAR 439 bp overlap
RHOXF1 1 dataset
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 414 bp overlap
Rarb 1 dataset
Motif DE_48h DE_48h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_48h DE_48h-Rarg_MA0859.2 15 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCFF676PLV 64 bp overlap
ChIP HEK293 ENCFF676PLV 426 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 514 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 428 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 388 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 228 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 476 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 512 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 424 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 493 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 385 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF265CEM 410 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 222 bp overlap
ZBTB33 2 datasets
ChIP K562 ENCFF427SDV 318 bp overlap
ChIP K562 ENCFF875HLX 324 bp overlap
ZNF135 1 dataset
Motif DE_48h DE_48h-ZNF135_MA1587.1 14 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 269 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 144 bp overlap
ZNF24 1 dataset
ChIP K562 ENCFF615YYW 140 bp overlap
ZNF384 2 datasets
ChIP HEK293T ENCFF019DZX 356 bp overlap
ChIP HEK293T ENCSR882ICT.ZNF384.HEK293T 309 bp overlap
ZNF646 1 dataset
ChIP HepG2 ENCFF141MBP 142 bp overlap
ZNF865 1 dataset
ChIP HepG2 ENCFF472KAQ 98 bp overlap
Zfp335 1 dataset
Motif DE_48h DE_48h-Zfp335_MA2002.2 7 bp overlap
Zfp809 1 dataset
Motif DE_48h DE_48h-Zfp809_MA2125.1 9 bp overlap