Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

52 transcription factors

ARID1A 1 dataset

ChIP HAP1 GSE108387.ARID1A.HAP1 484 bp overlap

ARID2 1 dataset

ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 59 bp overlap

ASH2L 2 datasets

ChIP H1 ENCFF399KAM 371 bp overlap

ChIP WA01 ENCSR850KIP.ASH2L.WA01 388 bp overlap

ASXL3 1 dataset

ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 277 bp overlap

BCOR 2 datasets

ChIP WA01 GSE104690.BCOR.WA01 332 bp overlap

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 539 bp overlap

BRD4 9 datasets

ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 433 bp overlap

ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 310 bp overlap

ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 575 bp overlap

ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 354 bp overlap

ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 204 bp overlap

ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 355 bp overlap

ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 240 bp overlap

ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 575 bp overlap

ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 575 bp overlap

CTBP2 1 dataset

ChIP WA01 ENCSR000EUO.CTBP2.WA01 226 bp overlap

CTCF 3 datasets

ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 552 bp overlap

ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 127 bp overlap

ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 237 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF274GAT 335 bp overlap

E2F6 2 datasets

ChIP H1 ENCFF785DWK 368 bp overlap

ChIP WA01 ENCSR000BSI.E2F6.WA01 426 bp overlap

ESR1 1 dataset

ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 64 bp overlap

FOXA1 1 dataset

ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 250 bp overlap

FOXP1 1 dataset

ChIP H9 GSE31006.FOXP1.H9 135 bp overlap

GLIS3 1 dataset

ChIP H9_plus GSE109562.GLIS3.H9_plus 575 bp overlap

HSF1 1 dataset

ChIP WA09_heat-shock GSE105028.HSF1.WA09_heat-shock 216 bp overlap

IKZF1 1 dataset

ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 167 bp overlap

JARID2 1 dataset

ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 228 bp overlap

JUN 1 dataset

ChIP HUES-8 GSE109524.JUN.HUES-8 371 bp overlap

KDM4C 1 dataset

ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 253 bp overlap

KLF9 1 dataset

ChIP GBM1A GSE62211.KLF9.GBM1A 335 bp overlap

MAX 5 datasets

ChIP H1 ENCFF914VQY 281 bp overlap

ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 141 bp overlap

ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 276 bp overlap

ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 222 bp overlap

ChIP WA01 ENCSR000EUP.MAX.WA01 138 bp overlap

MED1 1 dataset

ChIP MM1-S_JQ1_5000NM GSE49224.MED1.MM1-S_JQ1_5000NM 180 bp overlap

MTA2 1 dataset

ChIP RH4 GSE155861.MTA2.RH4 107 bp overlap

MYOD1 1 dataset

ChIP RH4 GSE83726.MYOD1.RH4 90 bp overlap

NANOG 1 dataset

ChIP HUES-8 GSE109524.NANOG.HUES-8 551 bp overlap

PCGF1 1 dataset

ChIP WA01 GSE104690.PCGF1.WA01 273 bp overlap

PDX1 1 dataset

ChIP hiPSC GSE125768.PDX1.hiPSC 233 bp overlap

POU5F1 3 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 387 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 438 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 318 bp overlap

RAD21 3 datasets

ChIP HAP1 GSE126634.RAD21.HAP1 567 bp overlap

ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 575 bp overlap

ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 250 bp overlap

RBBP4 1 dataset

ChIP RH5 GSE155861.RBBP4.RH5 298 bp overlap

RNF2 1 dataset

ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 300 bp overlap

RYBP 1 dataset

ChIP WA01 GSE104690.RYBP.WA01 575 bp overlap

SIX2 2 datasets

ChIP HEK GSE73865.SIX2.HEK 196 bp overlap

ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 171 bp overlap

SMAD2 1 dataset

ChIP hESC GSE29422.SMAD2.hESC 123 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 575 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 294 bp overlap

SMAD2_3 2 datasets

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 312 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 307 bp overlap

SMAD3 2 datasets

ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 213 bp overlap

ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 283 bp overlap

SMARCA4 5 datasets

ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 196 bp overlap

ChIP NSC GSE125033.SMARCA4.NSC 255 bp overlap

ChIP NSC GSE125033.SMARCA4.NSC 192 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 138 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 209 bp overlap

SMARCB1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 464 bp overlap

SMARCC1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 242 bp overlap

SMC1 1 dataset

ChIP HAP1_WaplKO-33_SCC4KO GSE94992.SMC1.HAP1_WaplKO-33_SCC4KO 175 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 497 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 575 bp overlap

SOX2 2 datasets

ChIP HNSC GSE69479.SOX2.HNSC 296 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 300 bp overlap

SP2 1 dataset

ChIP HEK293 GSE76494.SP2.HEK293 168 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 150 bp overlap

TBL1X 1 dataset

ChIP HEK293T GSE35197.TBL1X.HEK293T 111 bp overlap

TBX5 5 datasets

ChIP G296S GSE85628.TBX5.G296S 218 bp overlap

ChIP G296S_2 GSE85628.TBX5.G296S_2 218 bp overlap

ChIP G296S_4 GSE85628.TBX5.G296S_4 212 bp overlap

ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 201 bp overlap

ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 183 bp overlap

TCF12 1 dataset

ChIP WA01 ENCSR000BIT.TCF12.WA01 155 bp overlap

TFAP2C 1 dataset

ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 285 bp overlap

ZFX 1 dataset

ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 564 bp overlap

ZNF281 2 datasets

ChIP WTC11 ENCFF551GAV 357 bp overlap

ChIP WTC11 ENCFF551GAV 121 bp overlap

Gene	Dist. to TSS	Distance	Link type
PJA1	112.6 kb	Distal	Multiome
NALF2	226.2 kb	Distal	Multiome
EFNB1	449.1 kb	Distal	Multiome+HiCAR

Genome Browser