chrX : 51,618,489 51,619,063
574 bp 41 TFs 1 linked gene
This 574 bp open chromatin element is linked to CENPVL3 and is bound by 41 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CENPVL3 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:51,613,489 – 51,624,063
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
41 transcription factors
Source
Cell type
BCOR 3 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 394 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 280 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 156 bp overlap
BRD4 3 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 574 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 251 bp overlap
CREB1 3 datasets
ChIP GM23338 ENCFF432ZEW 304 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 131 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 135 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 251 bp overlap
E2F5 1 dataset
ChIP WTC11 ENCFF449LLF 440 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 329 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 531 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 424 bp overlap
ERG 1 dataset
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 264 bp overlap
EZH2 11 datasets
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 153 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 201 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 165 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 315 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 184 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 283 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 280 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 179 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 211 bp overlap
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 253 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 364 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 389 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 139 bp overlap
HOXB13 1 dataset
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 64 bp overlap
JARID2 4 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 457 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 441 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 458 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 215 bp overlap
KDM4A 6 datasets
ChIP H1 ENCFF078LED 329 bp overlap
ChIP H1 ENCFF078LED 538 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 487 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 241 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 170 bp overlap
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 201 bp overlap
MAX 5 datasets
ChIP H1 ENCFF914VQY 260 bp overlap
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 99 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 225 bp overlap
ChIP WTC11 ENCFF223QFY 348 bp overlap
ChIP WTC11 ENCFF223QFY 447 bp overlap
MED26 2 datasets
ChIP U2OS_SHCTR GSE73742.MED26.U2OS_SHCTR 329 bp overlap
ChIP U2OS_SHEP400 GSE73742.MED26.U2OS_SHEP400 374 bp overlap
MYBL2 1 dataset
ChIP WTC11 ENCFF166TKT 395 bp overlap
MYC 10 datasets
ChIP U2OS GSE44672.MYC.U2OS 100 bp overlap
ChIP U2OS GSE77356.MYC.U2OS 89 bp overlap
ChIP U2OS_Doxy GSE77356.MYC.U2OS_Doxy 75 bp overlap
ChIP U2OS_Doxy GSE44672.MYC.U2OS_Doxy 82 bp overlap
ChIP U2OS_Doxy GSE44672.MYC.U2OS_Doxy 119 bp overlap
ChIP U2OS_Doxy GSE77356.MYC.U2OS_Doxy 97 bp overlap
ChIP U2OS_Doxy GSE77328.MYC.U2OS_Doxy 106 bp overlap
ChIP U2OS_EtOH GSE77328.MYC.U2OS_EtOH 97 bp overlap
ChIP U2OS_SHRCTR GSE77356.MYC.U2OS_SHRCTR 155 bp overlap
ChIP U2OS_SHRCTR GSE77356.MYC.U2OS_SHRCTR 143 bp overlap
MYCN 1 dataset
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 222 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 186 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 117 bp overlap
NFYB 1 dataset
ChIP WTC11 ENCFF751ZTQ 352 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 349 bp overlap
POU5F1 4 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 292 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 380 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 403 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 186 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 481 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 484 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 443 bp overlap
RUVBL2 1 dataset
ChIP U2OS GSE130602.RUVBL2.U2OS 574 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 456 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 289 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 271 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 547 bp overlap
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 270 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 228 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 155 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 227 bp overlap
SUZ12 3 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 228 bp overlap
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 127 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 333 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 231 bp overlap
TBP 3 datasets
ChIP H1 ENCFF859IIO 314 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 125 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 136 bp overlap
TGIF2 1 dataset
ChIP WTC11 ENCFF649SHI 392 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 290 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 217 bp overlap
ZBTB33 1 dataset
ChIP WTC11 ENCFF048CFR 347 bp overlap
ZBTB48 1 dataset
ChIP U2OS GSE96776.ZBTB48.U2OS 305 bp overlap