chrX : 20,322,527 – 20,323,563
1,036 bp 63 TFs 2 linked genes
This 1.0 kb open chromatin element is linked to RPS6KA3 and EIF1AX and is bound by 63 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RPS6KA3 56.2 kb Distal Multiome
EIF1AX 181.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:20,317,527 – 20,328,563
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
63 transcription factors
Source
Cell type
AR 39 datasets
ChIP LNCaP GSE110655.AR.LNCaP 202 bp overlap
ChIP LNCaP ERP001226.AR.LNCaP 205 bp overlap
ChIP LNCaP GSE85558.AR.LNCaP 177 bp overlap
ChIP LNCaP ERP003503.AR.LNCaP 204 bp overlap
ChIP LNCaP_DHT GSE125245.AR.LNCaP_DHT 236 bp overlap
ChIP LNCaP_DHT GSE83860.AR.LNCaP_DHT 147 bp overlap
ChIP LNCaP_DHT_TNFA GSE83860.AR.LNCaP_DHT_TNFA 178 bp overlap
ChIP LNCaP_DSG GSE114737.AR.LNCaP_DSG 222 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 301 bp overlap
ChIP LNCaP_R1881 GSE62492.AR.LNCaP_R1881 283 bp overlap
ChIP LNCaP_R1881_HOTAIR GSE61268.AR.LNCaP_R1881_HOTAIR 129 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 311 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 180 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 253 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 197 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-N GSE114732.AR.LNCaP_androgen-Y_hypoxia-N 243 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 245 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 301 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 387 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 161 bp overlap
ChIP VCaP_DHAT_18H GSE28950.AR.VCaP_DHAT_18H 281 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 291 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 533 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 369 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 817 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 448 bp overlap
ChIP VCaP_DHTTHZ1 GSE125245.AR.VCaP_DHTTHZ1 194 bp overlap
ChIP VCaP_Darolutamide GSE148358.AR.VCaP_Darolutamide 285 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 294 bp overlap
ChIP VCaP_R1881_10C26 GSE32892.AR.VCaP_R1881_10C26 157 bp overlap
ChIP VCaP_R1881_1C30 GSE32892.AR.VCaP_R1881_1C30 158 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 246 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 259 bp overlap
ChIP VCaP_SH1_DHT GSE79128.AR.VCaP_SH1_DHT 406 bp overlap
ChIP VCaP_SH1_R1881 GSE79128.AR.VCaP_SH1_R1881 221 bp overlap
ChIP VCaP_SH2_R1881 GSE79128.AR.VCaP_SH2_R1881 205 bp overlap
ChIP VCaP_SH3_DHT GSE79128.AR.VCaP_SH3_DHT 291 bp overlap
ChIP VCaP_shCt GSE110655.AR.VCaP_shCt 165 bp overlap
ChIP prostate-cancer_C4-2-CON GSE136128.AR.prostate-cancer_C4-2-CON 184 bp overlap
ARNT::HIF1A 2 datasets
Motif DE_36h DE_36h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif DE_60h DE_60h-ARNTHIF1A_MA0259.2 5 bp overlap
ASH2L 1 dataset
ChIP VCaP_R1881 GSE60841.ASH2L.VCaP_R1881 203 bp overlap
BRD4 3 datasets
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 166 bp overlap
ChIP MOLM-14_IBET GSE65138.BRD4.MOLM-14_IBET 276 bp overlap
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 205 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 359 bp overlap
CEBPA 1 dataset
ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 101 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 907 bp overlap
ERG 1 dataset
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 191 bp overlap
ETV6 3 datasets
Motif DE_36h DE_36h-ETV6_MA0645.2 9 bp overlap
Motif DE_48h DE_48h-ETV6_MA0645.2 9 bp overlap
Motif DE_60h DE_60h-ETV6_MA0645.2 9 bp overlap
ETV7 3 datasets
Motif DE_36h DE_36h-ETV7_MA1708.2 9 bp overlap
Motif DE_48h DE_48h-ETV7_MA1708.2 9 bp overlap
Motif DE_60h DE_60h-ETV7_MA1708.2 9 bp overlap
FOXA1 15 datasets
ChIP LNCaP_DHT GSE28264.FOXA1.LNCaP_DHT 211 bp overlap
ChIP LNCaP_DSG GSE114737.FOXA1.LNCaP_DSG 237 bp overlap
ChIP LNCaP_F266S_shFOXA1 GSE128883.FOXA1.LNCaP_F266S_shFOXA1 255 bp overlap
ChIP LNCaP_G87R_shFOXA1 GSE128883.FOXA1.LNCaP_G87R_shFOXA1 186 bp overlap
ChIP LNCaP_L388M_shFOXA1 GSE128883.FOXA1.LNCaP_L388M_shFOXA1 165 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 229 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 135 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.FOXA1.LNCaP_SHGATA2_R1881 153 bp overlap
ChIP LNCaP_TFS GSE123618.FOXA1.LNCaP_TFS 177 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 208 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 772 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 158 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 334 bp overlap
ChIP prostate_2078_T GSE130408.FOXA1.prostate_2078_T 238 bp overlap
ChIP prostate_P27_T GSE130408.FOXA1.prostate_P27_T 166 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 894 bp overlap
ChIP DE DE-FOXA2-2 879 bp overlap
FOXH1 2 datasets
Motif DE_36h DE_36h-FOXH1_MA0479.2 8 bp overlap
Motif DE_60h DE_60h-FOXH1_MA0479.2 8 bp overlap
GATA1 1 dataset
Motif DE_36h DE_36h-GATA1_MA0035.5 7 bp overlap
GATA3 2 datasets
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 210 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 158 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 58 bp overlap
ChIP DE DE-GATA4-1 876 bp overlap
ChIP DE DE-GATA4-2 1031 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 1021 bp overlap
ChIP DE DE-GATA6-2 973 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 702 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 1012 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 720 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 142 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 795 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 1036 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 142 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 818 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 610 bp overlap
HOXB13 1 dataset
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 193 bp overlap
IKZF2 2 datasets
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
INSM1 1 dataset
Motif DE_36h DE_36h-INSM1_MA0155.1 12 bp overlap
Irf1 1 dataset
Motif DE_36h DE_36h-Irf1_MA0050.4 11 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 311 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 285 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 473 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 455 bp overlap
JUND 2 datasets
Motif DE_36h DE_36h-JUND_MA0492.2 11 bp overlap
Motif DE_60h DE_60h-JUND_MA0492.2 11 bp overlap
MED1 1 dataset
ChIP VCaP_DHTTHZ1 GSE125245.MED1.VCaP_DHTTHZ1 224 bp overlap
MEIS1 1 dataset
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MGA 2 datasets
Motif DE_36h DE_36h-MGA_MA0801.1 8 bp overlap
Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap
NKX3-1 1 dataset
ChIP LNCaP_DHT GSE28264.NKX3-1.LNCaP_DHT 144 bp overlap
NR1I2 1 dataset
Motif DE_36h DE_36h-NR1I2_MA1533.2 15 bp overlap
NR1I3 1 dataset
Motif DE_36h DE_36h-NR1I3_MA1534.2 8 bp overlap
Nr1h3::Rxra 1 dataset
Motif DE_36h DE_36h-Nr1h3Rxra_MA0494.2 16 bp overlap
PLAG1 1 dataset
Motif DE_36h DE_36h-PLAG1_MA0163.1 14 bp overlap
PPARA::RXRA 1 dataset
Motif DE_36h DE_36h-PPARARXRA_MA1148.2 17 bp overlap
Prdm15 1 dataset
Motif DE_36h DE_36h-Prdm15_MA1616.2 11 bp overlap
REST 2 datasets
Motif DE_36h DE_36h-REST_MA0138.3 20 bp overlap
Motif DE_60h DE_60h-REST_MA0138.3 20 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 464 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 234 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 958 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 960 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 683 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 504 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 918 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 535 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 954 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 687 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 325 bp overlap
SOX13 3 datasets
Motif DE_36h DE_36h-SOX13_MA1120.2 7 bp overlap
Motif DE_48h DE_48h-SOX13_MA1120.2 7 bp overlap
Motif DE_60h DE_60h-SOX13_MA1120.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 477 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 821 bp overlap
SOX2 3 datasets
Motif DE_36h DE_36h-SOX2_MA0143.5 7 bp overlap
Motif DE_48h DE_48h-SOX2_MA0143.5 7 bp overlap
Motif DE_60h DE_60h-SOX2_MA0143.5 7 bp overlap
SPIB 3 datasets
Motif DE_36h DE_36h-SPIB_MA0081.3 13 bp overlap
Motif DE_48h DE_48h-SPIB_MA0081.3 13 bp overlap
Motif DE_60h DE_60h-SPIB_MA0081.3 13 bp overlap
SPIC 3 datasets
Motif DE_36h DE_36h-SPIC_MA0687.2 13 bp overlap
Motif DE_48h DE_48h-SPIC_MA0687.2 13 bp overlap
Motif DE_60h DE_60h-SPIC_MA0687.2 13 bp overlap
Sox3 3 datasets
Motif DE_36h DE_36h-Sox3_MA0514.3 7 bp overlap
Motif DE_48h DE_48h-Sox3_MA0514.3 7 bp overlap
Motif DE_60h DE_60h-Sox3_MA0514.3 7 bp overlap
Spi1 3 datasets
Motif DE_36h DE_36h-Spi1_MA0080.7 13 bp overlap
Motif DE_48h DE_48h-Spi1_MA0080.7 13 bp overlap
Motif DE_60h DE_60h-Spi1_MA0080.7 13 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 384 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 321 bp overlap
TBX20 3 datasets
Motif DE_36h DE_36h-TBX20_MA0689.1 11 bp overlap
Motif DE_48h DE_48h-TBX20_MA0689.1 11 bp overlap
Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap
TBX21 2 datasets
Motif DE_36h DE_36h-TBX21_MA0690.3 10 bp overlap
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
TBX4 2 datasets
Motif DE_36h DE_36h-TBX4_MA0806.1 8 bp overlap
Motif DE_60h DE_60h-TBX4_MA0806.1 8 bp overlap
ZBTB12 1 dataset
Motif DE_36h DE_36h-ZBTB12_MA1649.2 7 bp overlap
ZBTB18 1 dataset
Motif DE_36h DE_36h-ZBTB18_MA0698.2 11 bp overlap
ZNF143 1 dataset
Motif DE_36h DE_36h-ZNF143_MA0088.2 16 bp overlap
ZNF257 2 datasets
Motif DE_36h DE_36h-ZNF257_MA1710.2 10 bp overlap
Motif DE_60h DE_60h-ZNF257_MA1710.2 10 bp overlap
ZNF317 3 datasets
Motif DE_36h DE_36h-ZNF317_MA1593.2 8 bp overlap
Motif DE_48h DE_48h-ZNF317_MA1593.2 8 bp overlap
Motif DE_60h DE_60h-ZNF317_MA1593.2 8 bp overlap
ZNF354C 2 datasets
Motif DE_36h DE_36h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_60h DE_60h-ZNF354C_MA0130.1 6 bp overlap
ZNF382 3 datasets
Motif DE_36h DE_36h-ZNF382_MA1594.1 24 bp overlap
Motif DE_48h DE_48h-ZNF382_MA1594.1 24 bp overlap
Motif DE_60h DE_60h-ZNF382_MA1594.1 24 bp overlap
ZNF549 3 datasets
Motif DE_36h DE_36h-ZNF549_MA1728.2 8 bp overlap
Motif DE_48h DE_48h-ZNF549_MA1728.2 8 bp overlap
Motif DE_60h DE_60h-ZNF549_MA1728.2 8 bp overlap
ZNF677 1 dataset
Motif DE_36h DE_36h-ZNF677_MA2101.1 12 bp overlap
ZNF682 2 datasets
Motif DE_36h DE_36h-ZNF682_MA1599.2 11 bp overlap
Motif DE_60h DE_60h-ZNF682_MA1599.2 11 bp overlap
ZNF816 3 datasets
Motif DE_36h DE_36h-ZNF816_MA1719.2 15 bp overlap
Motif DE_48h DE_48h-ZNF816_MA1719.2 15 bp overlap
Motif DE_60h DE_60h-ZNF816_MA1719.2 15 bp overlap
ZNF85 1 dataset
Motif DE_36h DE_36h-ZNF85_MA1720.2 12 bp overlap
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