chrX : 3,346,812 3,347,272
460 bp 44 TFs 1 linked gene
This 460 bp open chromatin element is linked to MXRA5 and is bound by 44 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
MXRA5 160 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:3,341,812 – 3,352,272
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
44 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP MCF-7_aza GSE85352.ARNT.MCF-7_aza 336 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 307 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 460 bp overlap
BRD4 4 datasets
ChIP MCF-10A ERP003925.BRD4.MCF-10A 460 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 394 bp overlap
ChIP T-47D ERP003925.BRD4.T-47D 266 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 240 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 96 bp overlap
CTCF 2 datasets
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 240 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 53 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 167 bp overlap
ESR1 8 datasets
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 247 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 264 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 236 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 217 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 234 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 342 bp overlap
ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 211 bp overlap
ChIP breast_tumor_Male_21 GSE104399.ESR1.breast_tumor_Male_21 281 bp overlap
ETS1 1 dataset
ChIP SCC-25 GSE109884.ETS1.SCC-25 402 bp overlap
EZH2 4 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 286 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 460 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 460 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 442 bp overlap
FOXA1 1 dataset
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 182 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 185 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 171 bp overlap
JARID2 3 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 254 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 390 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 211 bp overlap
KDM4A 2 datasets
ChIP WA01 ENCSR000AVC.KDM4A.WA01 460 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 196 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 180 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 451 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 328 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 148 bp overlap
ChIP WTC11 ENCFF223QFY 396 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 84 bp overlap
NELFA 1 dataset
ChIP BT-474_INHHDAC ERP010664.NELFA.BT-474_INHHDAC 242 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 254 bp overlap
POLR2A 7 datasets
ChIP adrenal gland ENCFF843OBJ 448 bp overlap
ChIP body of pancreas ENCFF501FEC 460 bp overlap
ChIP body of pancreas ENCFF675RCN 203 bp overlap
ChIP body of pancreas ENCFF727UBE 196 bp overlap
ChIP spleen ENCFF446ZGT 318 bp overlap
ChIP thyroid gland ENCFF979LRR 391 bp overlap
ChIP vagina ENCFF384GAB 460 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 109 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 460 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 214 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 460 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 203 bp overlap
RAD21 2 datasets
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 460 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 406 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 313 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 206 bp overlap
RNF2 2 datasets
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 254 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 202 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 301 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 460 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 121 bp overlap
SMARCB1 2 datasets
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 81 bp overlap
ChIP proliferating-human-fibroblast_ASO_LINC GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_LINC 264 bp overlap
SREBP2 3 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 125 bp overlap
ChIP HCC70 GSE126380.SREBP2.HCC70 201 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 97 bp overlap
STAT3 3 datasets
ChIP BT-474 GSE152203.STAT3.BT-474 194 bp overlap
ChIP HCC70 GSE152203.STAT3.HCC70 156 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 321 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 251 bp overlap
TBP 4 datasets
ChIP H1 ENCFF859IIO 377 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 179 bp overlap
ChIP hiPSC_WTa_RNase-pos GSE128135.TBP.hiPSC_WTa_RNase-pos 226 bp overlap
ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 233 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 460 bp overlap
TP63 3 datasets
ChIP SUIT-2 GSE115461.TP63.SUIT-2 183 bp overlap
ChIP keratinocyte GSE33571.TP63.keratinocyte 134 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 187 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 237 bp overlap
YY1 1 dataset
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 126 bp overlap
ZBTB7A 1 dataset
ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 200 bp overlap