chr2 : 18,988,713 – 18,989,096

383 bp 60 TFs 0 linked genes

This 383 bp open chromatin element has no linked target genes and is bound by 60 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

60 transcription factors

ARID1A 1 dataset

ChIP HAP1 GSE108387.ARID1A.HAP1 232 bp overlap

ARNTL 2 datasets

ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 209 bp overlap

ChIP U2OS_trough_DMOG GSE85096.ARNTL.U2OS_trough_DMOG 200 bp overlap

BHLHE22 1 dataset

Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap

BRD2 1 dataset

ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 110 bp overlap

BRD4 3 datasets

ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.BRD4.MCF-7_ARID1A-KO_4-OHT 219 bp overlap

ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 180 bp overlap

ChIP T-47D_DMSO GSE63581.BRD4.T-47D_DMSO 383 bp overlap

Bcl11B 1 dataset

Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap

CHD7 1 dataset

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 383 bp overlap

CRY1 2 datasets

ChIP U2OS GSE130602.CRY1.U2OS 374 bp overlap

ChIP U2OS_DMSO GSE130506.CRY1.U2OS_DMSO 374 bp overlap

CTCF 12 datasets

ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 102 bp overlap

ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 50 bp overlap

ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 119 bp overlap

ChIP brain ENCFF685VRG 268 bp overlap

ChIP coronary-artery ENCSR175FLL.CTCF.coronary-artery 125 bp overlap

ChIP endodermal cell ENCFF471YCZ 214 bp overlap

ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 127 bp overlap

ChIP neural progenitor cell ENCFF581WPG 352 bp overlap

ChIP neural progenitor cell ENCFF581WPG 152 bp overlap

ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 70 bp overlap

ChIP right atrium auricular region ENCFF690LBT 134 bp overlap

ChIP thoracic-aorta ENCSR549TXG.CTCF.thoracic-aorta 192 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF031ISE 217 bp overlap

ETS1 2 datasets

ChIP HUVEC-C_12h GSE93030.ETS1.HUVEC-C_12h 117 bp overlap

ChIP HUVEC-C_VEGF_12h GSE109625.ETS1.HUVEC-C_VEGF_12h 117 bp overlap

EZH2 1 dataset

ChIP neural progenitor cell ENCFF018MKA 338 bp overlap

EZH2_phosphoT487 1 dataset

ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 291 bp overlap

Gfi1B 1 dataset

Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap

HIF1A 1 dataset

ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 138 bp overlap

HNF1A 1 dataset

Motif DE_12h DE_12h-HNF1A_MA0046.3 13 bp overlap

Lhx3 1 dataset

Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap

MYOD1 1 dataset

ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 383 bp overlap

NANOG 1 dataset

ChIP HUES-8 GSE109524.NANOG.HUES-8 339 bp overlap

NEUROG2 2 datasets

ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 76 bp overlap

ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 80 bp overlap

NFKB1 1 dataset

ChIP L1236 GSE63736.NFKB1.L1236 67 bp overlap

NHLH1 1 dataset

Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap

NHLH2 1 dataset

Motif DE_12h DE_12h-NHLH2_MA1529.2 16 bp overlap

NR2F2 1 dataset

ChIP liver ENCSR168SMX.NR2F2.liver 95 bp overlap

NR3C1 1 dataset

ChIP HeLa-B2_GRKD_DMSO GSE24518.NR3C1.HeLa-B2_GRKD_DMSO 84 bp overlap

Neurod2 1 dataset

Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap

Nr2e1 1 dataset

Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap

Olig2 1 dataset

Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap

PGR 3 datasets

ChIP AB32 GSE31129.PGR.AB32 214 bp overlap

ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 83 bp overlap

ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 108 bp overlap

POU4F2 2 datasets

ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 109 bp overlap

ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 138 bp overlap

POU5F1 2 datasets

ChIP HUES-8 GSE109524.POU5F1.HUES-8 317 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 283 bp overlap

Pgr 1 dataset

Motif ES_0h ES_0h-Pgr_MA2323.1 17 bp overlap

Ptf1A 1 dataset

Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap

RAD21 1 dataset

ChIP HAP1 GSE152721.RAD21.HAP1 138 bp overlap

RBPJ 1 dataset

ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 252 bp overlap

RUNX2 1 dataset

Motif DE_12h DE_12h-RUNX2_MA0511.2 9 bp overlap

RUVBL2 1 dataset

ChIP U2OS_DMSO GSE130507.RUVBL2.U2OS_DMSO 213 bp overlap

RXRG 1 dataset

Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap

Runx1 1 dataset

Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap

Rxra 1 dataset

Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap

SIX2 1 dataset

Motif ES_0h ES_0h-SIX2_MA1119.2 11 bp overlap

SMARCA4 4 datasets

ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 383 bp overlap

ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 289 bp overlap

ChIP NSC GSE125033.SMARCA4.NSC 367 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 74 bp overlap

SMARCC1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 302 bp overlap

SNAI2 1 dataset

ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 165 bp overlap

SOX10 1 dataset

Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap

SOX2 4 datasets

ChIP HNSC GSE69479.SOX2.HNSC 383 bp overlap

ChIP NPC GSE122631.SOX2.NPC 206 bp overlap

ChIP hiPSC GSE67282.SOX2.hiPSC 253 bp overlap

ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 203 bp overlap

SS18 1 dataset

ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 383 bp overlap

TEAD1 1 dataset

Motif ES_0h ES_0h-TEAD1_MA0090.4 9 bp overlap

TEAD4 1 dataset

Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap

TFAP2A 1 dataset

Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap

TFAP2C 1 dataset

Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap

TFAP4 1 dataset

Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap

Tcf12 1 dataset

Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap

Twist2 1 dataset

Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap

YY1 1 dataset

ChIP WA01 ENCSR000BKD.YY1.WA01 88 bp overlap

ZNF274 1 dataset

Motif ES_0h ES_0h-ZNF274_MA1592.2 12 bp overlap

ZNF317 1 dataset

Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap

ZNF331 2 datasets

Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap

ZNF766 1 dataset

Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap

Zfp335 1 dataset

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap