chr20 : 51,449,050 51,449,553
503 bp 56 TFs 2 linked genes
This 503 bp open chromatin element is linked to NFATC2 and KCNG1 and is bound by 56 transcription factors.
Linked Genes
2 genes
Link type
Gene Expression Dist. to TSS Distance Link type
NFATC2 113.3 kb Distal Multiome
KCNG1 426.2 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:51,444,050 – 51,454,553
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
56 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_2752_T GSE130408.AR.prostate_2752_T 124 bp overlap
ARID2 1 dataset
ChIP Aska-SS GSE108025.ARID2.Aska-SS 327 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 193 bp overlap
BRD4 2 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 254 bp overlap
ChIP SUM1315_DMSO GSE63581.BRD4.SUM1315_DMSO 303 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 206 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231 GSE112444.CDKN1B.MDA-MB-231 171 bp overlap
CEBPA 1 dataset
ChIP liver ERP002306.CEBPA.liver 136 bp overlap
CEBPB 1 dataset
ChIP A-549 ENCSR000BUB.CEBPB.A-549 208 bp overlap
CTCF 3 datasets
ChIP gastroesophageal-sphincter ENCSR146BGM.CTCF.gastroesophageal-sphincter 153 bp overlap
ChIP heart_left-ventricle ENCSR791AYW.CTCF.heart_left-ventricle 148 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 204 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF031ISE 274 bp overlap
ChIP BLaER1 ENCFF262VBH 236 bp overlap
ChIP BLaER1 ENCFF274GAT 282 bp overlap
DPF2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 315 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 127 bp overlap
ChIP hESC GSE26097.EOMES.hESC 192 bp overlap
EP300 2 datasets
ChIP sigmoid colon ENCFF524QSR 260 bp overlap
ChIP tibial nerve ENCFF346AYA 253 bp overlap
ESR1 2 datasets
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 360 bp overlap
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 351 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 83 bp overlap
FOS 2 datasets
ChIP leiomyoma_PT886 GSE128230.FOS.leiomyoma_PT886 70 bp overlap
ChIP myometrium_PT886 GSE128230.FOS.myometrium_PT886 237 bp overlap
FOSL1 1 dataset
ChIP BT-549 GSE112961.FOSL1.BT-549 396 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 480 bp overlap
ChIP DE DE-GATA4-2 472 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 503 bp overlap
ChIP DE DE-GATA6-2 407 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 383 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 261 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 503 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 236 bp overlap
JUN 2 datasets
ChIP HAEC_oxpapc_4h GSE89970.JUN.HAEC_oxpapc_4h 67 bp overlap
ChIP myometrium_PT886 GSE128230.JUN.myometrium_PT886 202 bp overlap
KDM1A 1 dataset
ChIP A549 ENCFF633QSB 100 bp overlap
MED12 3 datasets
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 163 bp overlap
ChIP myometrium_PT886 GSE128230.MED12.myometrium_PT886 196 bp overlap
ChIP myometrium_PT916 GSE128230.MED12.myometrium_PT916 90 bp overlap
MEF2B 1 dataset
ChIP DLBCL GSE110682.MEF2B.DLBCL 81 bp overlap
MYC 1 dataset
ChIP MCF-7 ENCFF394LGD 303 bp overlap
MYOD1 2 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 383 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 173 bp overlap
NFKB1 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 208 bp overlap
NFXL1 1 dataset
ChIP GM12878 ENCSR746XEG.NFXL1.GM12878 259 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 102 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 62 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 127 bp overlap
NR2F2 2 datasets
ChIP liver ENCFF565JGD 369 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 364 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 269 bp overlap
NRF1 1 dataset
ChIP MCF-7 ENCFF148IMD 269 bp overlap
PHIP 2 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 64 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 272 bp overlap
POLR2A 14 datasets
ChIP breast epithelium ENCFF960NNA 380 bp overlap
ChIP breast epithelium ENCFF960NNA 336 bp overlap
ChIP esophagus muscularis mucosa ENCFF432ZCY 389 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 197 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 275 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 221 bp overlap
ChIP sigmoid colon ENCFF101ILL 273 bp overlap
ChIP sigmoid colon ENCFF725QFT 380 bp overlap
ChIP sigmoid colon ENCFF748YVT 347 bp overlap
ChIP sigmoid colon ENCFF754JQR 248 bp overlap
ChIP stomach ENCFF820WZN 311 bp overlap
ChIP transverse colon ENCFF607LKE 287 bp overlap
ChIP transverse colon ENCFF610RWV 325 bp overlap
ChIP vagina ENCFF305NWS 254 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 279 bp overlap
PRPF4 2 datasets
ChIP Hep-G2 GSE120104.PRPF4.Hep-G2 206 bp overlap
ChIP Hep-G2 ENCSR243LNQ.PRPF4.Hep-G2 174 bp overlap
RELA 7 datasets
ChIP 786-O GSE86092.RELA.786-O 186 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 412 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 139 bp overlap
ChIP HeLa-B2_TA_TNFA GSE24518.RELA.HeLa-B2_TA_TNFA 276 bp overlap
ChIP HeLa-B2_TNFA GSE24518.RELA.HeLa-B2_TNFA 255 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 406 bp overlap
ChIP SW480_16h_TNFa GSE102796.RELA.SW480_16h_TNFa 204 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 224 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 503 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 503 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 424 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 503 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 430 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 503 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 503 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 168 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 299 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 261 bp overlap
SMARCA4 4 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 503 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 388 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 257 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 293 bp overlap
SMARCC1 3 datasets
ChIP SCCOHT-1 GSE117734.SMARCC1.SCCOHT-1 183 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 78 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 158 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 272 bp overlap
SREBP2 2 datasets
ChIP monocyte GSE129202.SREBP2.monocyte 129 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 277 bp overlap
SS18 3 datasets
ChIP SYO-1 GSE108025.SS18.SYO-1 503 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 150 bp overlap
ChIP SYO-1_shSSX GSE108025.SS18.SYO-1_shSSX 87 bp overlap
STAT3 1 dataset
ChIP A139 GSE85579.STAT3.A139 82 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 153 bp overlap
TAF1 2 datasets
ChIP HepG2 ENCFF946IUP 120 bp overlap
ChIP K-562 ENCSR000BKS.TAF1.K-562 166 bp overlap
TBX5 3 datasets
ChIP cardiomyocyte GSE85628.TBX5.cardiomyocyte 65 bp overlap
ChIP cardiomyocyte_1 GSE85628.TBX5.cardiomyocyte_1 65 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 155 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 217 bp overlap
ZFP36 1 dataset
ChIP A549 ENCFF505LUC 65 bp overlap