chr20 : 17,752,432 17,753,052
620 bp 60 TFs 4 linked genes
This 620 bp open chromatin element is linked to 4 target genes and is bound by 60 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
RRBP1 70.4 kb Distal Multiome
DSTN 182.6 kb Distal Multiome
SNX5 216.1 kb Distal Multiome
MGME1 216.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:17,747,432 – 17,758,052
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 303 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 246 bp overlap
CTCF 1 dataset
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
CTNNB1 2 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 305 bp overlap
ChIP hESC_activinA_15h GSE99202.CTNNB1.hESC_activinA_15h 291 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 162 bp overlap
EP300 1 dataset
ChIP hESC GSE17917.EP300.hESC 285 bp overlap
ESR1 1 dataset
ChIP breast_tumor_Male_3 GSE104399.ESR1.breast_tumor_Male_3 330 bp overlap
FERD3L 1 dataset
Motif DE_12h DE_12h-FERD3L_MA1485.1 14 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Gfi1B 1 dataset
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
Isl1 1 dataset
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
JUN 4 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 458 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 363 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 383 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 443 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 266 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 326 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 289 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 620 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 584 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 224 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 620 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 444 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 278 bp overlap
ChIP hESC GSE18292.NANOG.hESC 222 bp overlap
NIPBL 4 datasets
ChIP hESC GSE64758.NIPBL.hESC 229 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 255 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 324 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 195 bp overlap
POU5F1 8 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 464 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 612 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 330 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 575 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 201 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 132 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 359 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 271 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 253 bp overlap
REST 1 dataset
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 129 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 158 bp overlap
SMAD2 2 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 279 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 378 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 343 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 252 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 340 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 285 bp overlap
SMAD3 1 dataset
ChIP hESC GSE29422.SMAD3.hESC 166 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 373 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 258 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 432 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 246 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 479 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 336 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 323 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 514 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 218 bp overlap
Smad4 1 dataset
Motif DE_12h DE_12h-Smad4_MA1153.2 7 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 264 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 327 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0872.1 13 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 1 dataset
Motif DE_12h DE_12h-TFAP2C_MA0815.1 13 bp overlap
Tfcp2l1 1 dataset
Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 146 bp overlap
ZBTB7B 1 dataset
Motif DE_12h DE_12h-ZBTB7B_MA0694.2 10 bp overlap
ZBTB7C 2 datasets
Motif DE_12h DE_12h-ZBTB7C_MA0695.2 8 bp overlap
Motif DE_12h DE_12h-ZBTB7C_MA0695.2 8 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZFP82 1 dataset
ChIP HepG2 ENCFF665HBX 222 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 250 bp overlap
ZNF341 1 dataset
Motif DE_12h DE_12h-ZNF341_MA1655.2 8 bp overlap
ZNF382 1 dataset
Motif DE_12h DE_12h-ZNF382_MA1594.1 24 bp overlap
ZNF396 1 dataset
ChIP WTC11 ENCFF776JWJ 301 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 288 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 443 bp overlap
ZNF608 1 dataset
ChIP HepG2 ENCFF713QUJ 141 bp overlap
ZNF652 1 dataset
Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap