chr20 : 11,979,409 – 11,980,041
632 bp 59 TFs 1 linked gene
This 632 bp open chromatin element is linked to BTBD3 and is bound by 59 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
BTBD3 88.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:11,974,409 – 11,985,041
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 117 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 505 bp overlap
ARNT 1 dataset
ChIP GM12878 ENCSR590KEQ.ARNT.GM12878 296 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 381 bp overlap
BCL11A 1 dataset
ChIP GM12878 ENCSR000BHA.BCL11A.GM12878 126 bp overlap
BORCS8-MEF2B,MEF2B 1 dataset
ChIP GM12878 ENCFF427QAI 361 bp overlap
BRD4 15 datasets
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 352 bp overlap
ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 222 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 632 bp overlap
ChIP MM1-S_DMSO GSE42161.BRD4.MM1-S_DMSO 483 bp overlap
ChIP MM1-S_JQ1_150NM GSE49224.BRD4.MM1-S_JQ1_150NM 427 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.BRD4.MM1-S_JQ1_500NM 475 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 526 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 542 bp overlap
ChIP MM1-S_JQ1_5UM GSE42355.BRD4.MM1-S_JQ1_5UM 187 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 246 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 632 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 366 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 299 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 590 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 320 bp overlap
CDK9 2 datasets
ChIP MM1-S_JQ1_5000NM GSE49224.CDK9.MM1-S_JQ1_5000NM 254 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.CDK9.MM1-S_JQ1_5000NM 252 bp overlap
CTCF 2 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 557 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 175 bp overlap
DMRTA1 1 dataset
Motif ES_0h ES_0h-DMRTA1_MA1707.2 10 bp overlap
DMRTA2 1 dataset
Motif ES_0h ES_0h-DMRTA2_MA1478.2 6 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF753XDO 254 bp overlap
IKZF2 4 datasets
ChIP GM12878 ENCFF238LYK 601 bp overlap
ChIP GM12878 ENCFF918AID 551 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 530 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 391 bp overlap
IRF3 1 dataset
Motif ES_0h ES_0h-IRF3_MA1418.2 17 bp overlap
IRF4 2 datasets
ChIP BC-3 GSE132777.IRF4.BC-3 391 bp overlap
Motif ES_0h ES_0h-IRF4_MA1419.2 14 bp overlap
IRF7 1 dataset
Motif ES_0h ES_0h-IRF7_MA0772.2 13 bp overlap
IRF8 1 dataset
Motif ES_0h ES_0h-IRF8_MA0652.2 13 bp overlap
IRF9 1 dataset
Motif ES_0h ES_0h-IRF9_MA0653.1 15 bp overlap
Irf1 1 dataset
Motif ES_0h ES_0h-Irf1_MA0050.4 11 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 461 bp overlap
MED1 4 datasets
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 491 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 310 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 632 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 481 bp overlap
MEF2A 1 dataset
ChIP GM12878 ENCSR000BKB.MEF2A.GM12878 193 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 590 bp overlap
MEF2C 1 dataset
ChIP GM12878 ENCSR000BNG.MEF2C.GM12878 196 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 238 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 539 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 632 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 632 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 419 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 593 bp overlap
ChIP hESC GSE18292.NANOG.hESC 402 bp overlap
NFATC3 3 datasets
ChIP GM12878 ENCFF340KVJ 487 bp overlap
ChIP GM12878 ENCFF340KVJ 508 bp overlap
ChIP GM12878 ENCSR437GBJ.NFATC3.GM12878 480 bp overlap
POLR2A 2 datasets
ChIP H1 ENCFF566JSR 139 bp overlap
ChIP H1 ENCFF833NJP 221 bp overlap
POU5F1 7 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 115 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 514 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 605 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 632 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 262 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 341 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 548 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 133 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 632 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 440 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 510 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 632 bp overlap
RBPJ 3 datasets
ChIP GSC8-11 GSE74557.RBPJ.GSC8-11 266 bp overlap
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 503 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 466 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 576 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 312 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 139 bp overlap
SMARCA4 3 datasets
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 377 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 632 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 632 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 598 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 298 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 518 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 497 bp overlap
SOX2 4 datasets
ChIP HNSC GSE69479.SOX2.HNSC 632 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 214 bp overlap
ChIP hESC GSE18292.SOX2.hESC 214 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 431 bp overlap
SOX21 1 dataset
Motif ES_0h ES_0h-SOX21_MA0866.1 15 bp overlap
SREBF1 1 dataset
ChIP GM12878 ENCFF321ERB 95 bp overlap
STAT1::STAT2 1 dataset
Motif ES_0h ES_0h-STAT1STAT2_MA0517.2 13 bp overlap
Sox1 1 dataset
Motif ES_0h ES_0h-Sox1_MA0870.1 15 bp overlap
Stat2 1 dataset
Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap
Stat5b 1 dataset
Motif ES_0h ES_0h-Stat5b_MA1625.2 9 bp overlap
TAF7 2 datasets
ChIP H1 ENCFF061XZZ 264 bp overlap
ChIP WA01 ENCSR000BLU.TAF7.WA01 189 bp overlap
TBP 5 datasets
ChIP GM12878 ENCFF571OXR 385 bp overlap
ChIP GM12878 ENCFF571OXR 385 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 125 bp overlap
ChIP hESC GSE122298.TBP.hESC 178 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 152 bp overlap
TBX21 2 datasets
ChIP GM12878 ENCFF951HUW 182 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 502 bp overlap
TRIM22 1 dataset
ChIP GM12878 ENCSR835XKS.TRIM22.GM12878 257 bp overlap
ZBTB40 1 dataset
ChIP GM12878 ENCSR189YYK.ZBTB40.GM12878 142 bp overlap
ZIM3 1 dataset
ChIP HEK293T GSE78099.ZIM3.HEK293T 98 bp overlap
ZNF217 1 dataset
ChIP GM12878 ENCSR764CZW.ZNF217.GM12878 360 bp overlap
ZNF24 1 dataset
ChIP GM12878 ENCSR072PWP.ZNF24.GM12878 203 bp overlap
ZNF398 1 dataset
ChIP BG01V GSE133630.ZNF398.BG01V 158 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 553 bp overlap
ZNF667 1 dataset
Motif ES_0h ES_0h-ZNF667_MA1984.2 11 bp overlap
ZNF680 1 dataset
Motif ES_0h ES_0h-ZNF680_MA1729.2 11 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 181 bp overlap
ZSCAN21 1 dataset
Motif ES_0h ES_0h-ZSCAN21_MA2336.1 7 bp overlap
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