chr18 : 54,069,643 – 54,070,312

669 bp 72 TFs 0 linked genes

This 669 bp open chromatin element has no linked target genes and is bound by 72 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

72 transcription factors

ATOH7 1 dataset

Motif DE_12h DE_12h-ATOH7_MA1468.1 10 bp overlap

Atoh1 1 dataset

Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap

BCL6 1 dataset

ChIP OCI-Ly1_UV GSE103125.BCL6.OCI-Ly1_UV 121 bp overlap

BCOR 1 dataset

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 176 bp overlap

BHLHA15 1 dataset

Motif DE_12h DE_12h-BHLHA15_MA0607.2 10 bp overlap

CHD7 2 datasets

ChIP H1 ENCFF126NLU 493 bp overlap

ChIP H1 ENCFF126NLU 572 bp overlap

CREB1 1 dataset

Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap

CTCF 1 dataset

Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap

GATA2 1 dataset

Motif DE_12h DE_12h-GATA2_MA0036.4 7 bp overlap

GATA4 1 dataset

Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap

GATA5 1 dataset

Motif DE_12h DE_12h-GATA5_MA0766.3 8 bp overlap

GATA6 6 datasets

Motif DE_12h DE_12h-GATA6_MA1104.3 8 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 364 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 355 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 535 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 474 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 480 bp overlap

Gata3 1 dataset

Motif DE_12h DE_12h-Gata3_MA0037.5 8 bp overlap

HAND2 1 dataset

Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap

HMBOX1 2 datasets

Motif DE_12h DE_12h-HMBOX1_MA0895.2 7 bp overlap

Lhx3 1 dataset

Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap

MORC2 1 dataset

ChIP H9 GSE95374.MORC2.H9 218 bp overlap

Mecom 1 dataset

Motif DE_12h DE_12h-Mecom_MA0029.2 11 bp overlap

Msgn1 1 dataset

Motif DE_12h DE_12h-Msgn1_MA1524.3 10 bp overlap

NANOG 6 datasets

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 166 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 388 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 226 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 411 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 231 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 357 bp overlap

NEUROD1 1 dataset

Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap

NEUROG2 2 datasets

Motif DE_12h DE_12h-NEUROG2_MA0669.1 10 bp overlap

Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap

NFATC4 1 dataset

Motif DE_12h DE_12h-NFATC4_MA1525.3 9 bp overlap

NIPBL 1 dataset

ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 207 bp overlap

NRL 1 dataset

Motif DE_12h DE_12h-NRL_MA0842.3 12 bp overlap

Neurod2 1 dataset

Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap

OLIG1 1 dataset

Motif DE_12h DE_12h-OLIG1_MA0826.1 10 bp overlap

OLIG2 1 dataset

Motif DE_12h DE_12h-OLIG2_MA0678.1 10 bp overlap

OLIG3 1 dataset

Motif DE_12h DE_12h-OLIG3_MA0827.1 10 bp overlap

PHOX2A 1 dataset

Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap

PHOX2B 1 dataset

Motif DE_12h DE_12h-PHOX2B_MA0681.3 12 bp overlap

POU1F1 2 datasets

Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap

Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap

POU2F1 2 datasets

Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap

Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap

POU2F1::SOX2 2 datasets

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap

POU2F2 2 datasets

Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap

Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap

POU3F1 2 datasets

Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap

Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap

POU3F2 2 datasets

Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap

Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap

POU3F3 2 datasets

Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap

Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap

POU5F1 9 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 323 bp overlap

ChIP H1 ENCFF698ZAP 205 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 429 bp overlap

ChIP NCCIT GSE36134.POU5F1.NCCIT 373 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 365 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 131 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 516 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 508 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 192 bp overlap

POU5F1B 2 datasets

Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap

Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap

PROP1 1 dataset

Motif DE_12h DE_12h-PROP1_MA0715.1 11 bp overlap

Pou5f1::Sox2 2 datasets

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap

Ptf1A 1 dataset

Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap

SMAD2_3 1 dataset

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 339 bp overlap

SMARCA4 2 datasets

ChIP hiPSC GSE124903.SMARCA4.hiPSC 286 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 202 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 302 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 208 bp overlap

SMARCC1 3 datasets

ChIP DE_D1 S10-DE-d1-BAF155-exp1 282 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 228 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 193 bp overlap

SOX2 1 dataset

ChIP hiPSC GSE56567.SOX2.hiPSC 270 bp overlap

SPIB 1 dataset

Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap

SPIC 1 dataset

Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap

Spi1 1 dataset

Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap

Stat4 1 dataset

Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap

Stat5a 1 dataset

Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap

TAL1::TCF3 1 dataset

Motif DE_12h DE_12h-TAL1TCF3_MA0091.2 10 bp overlap

TCF12 1 dataset

ChIP WA01 ENCSR000BIT.TCF12.WA01 156 bp overlap

TCF21 1 dataset

Motif DE_12h DE_12h-TCF21_MA1568.2 10 bp overlap

TCF3 1 dataset

ChIP NPC GSE154479.TCF3.NPC 302 bp overlap

TCF7L2 1 dataset

Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap

TFAP4 1 dataset

Motif DE_12h DE_12h-TFAP4_MA1570.1 10 bp overlap

THRB 1 dataset

Motif DE_12h DE_12h-THRB_MA1575.2 17 bp overlap

TRPS1 1 dataset

Motif DE_12h DE_12h-TRPS1_MA1970.2 8 bp overlap

Tcf21 1 dataset

Motif DE_12h DE_12h-Tcf21_MA0832.2 10 bp overlap

ZBTB7C 1 dataset

Motif DE_12h DE_12h-ZBTB7C_MA0695.2 8 bp overlap

ZIM3 2 datasets

Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap

Motif ES_0h ES_0h-ZIM3_MA1709.2 11 bp overlap

ZNF324 1 dataset

Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap

ZNF384 2 datasets

Motif DE_12h DE_12h-ZNF384_MA1125.2 8 bp overlap

ZNF530 1 dataset

Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap

ZNF558 1 dataset

Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap

ZNF652 1 dataset

Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap

ZNF680 1 dataset

Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap

Zfp335 1 dataset

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap

Zfx 2 datasets

Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap

Motif ES_0h ES_0h-Zfx_MA0146.3 10 bp overlap