chr16 : 72,128,475 – 72,129,058

583 bp 75 TFs 0 linked genes

This 583 bp open chromatin element has no linked target genes and is bound by 75 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

75 transcription factors

BCOR 1 dataset

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 264 bp overlap

BRD4 1 dataset

ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 135 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF262VBH 219 bp overlap

EBF1 1 dataset

Motif DE_24h DE_24h-EBF1_MA0154.5 11 bp overlap

EBF3 1 dataset

Motif DE_24h DE_24h-EBF3_MA1637.2 9 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 369 bp overlap

ESR1 1 dataset

ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 126 bp overlap

Ebf2 1 dataset

Motif DE_24h DE_24h-Ebf2_MA1604.2 9 bp overlap

Ebf4 1 dataset

Motif DE_24h DE_24h-Ebf4_MA2122.1 11 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 500 bp overlap

ChIP DE DE-FOXA2-2 488 bp overlap

GATA4 3 datasets

ChIP DE DE-GATA4-1 526 bp overlap

ChIP DE DE-GATA4-2 574 bp overlap

ChIP foregut GSE117136.GATA4.foregut 399 bp overlap

GATA6 10 datasets

ChIP DE DE-GATA6-1 548 bp overlap

ChIP DE DE-GATA6-2 568 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 583 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 583 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 583 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 583 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 583 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 422 bp overlap

ChIP foregut GSE117136.GATA6.foregut 356 bp overlap

ChIP foregut_KO GSE117136.GATA6.foregut_KO 306 bp overlap

HNF4A 1 dataset

Motif DE_24h DE_24h-HNF4A_MA1494.2 14 bp overlap

JUN 5 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 427 bp overlap

ChIP DE_D1 S13-DE-d1-JUN-exp1 358 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 578 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 486 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 583 bp overlap

KDM4A 1 dataset

ChIP WA01 ENCSR000AVC.KDM4A.WA01 144 bp overlap

KLF4 1 dataset

Motif DE_24h DE_24h-KLF4_MA0039.5 8 bp overlap

MAZ 1 dataset

Motif DE_24h DE_24h-MAZ_MA1522.2 8 bp overlap

MYB 2 datasets

Motif DE_24h DE_24h-MYB_MA0100.4 6 bp overlap

NANOG 6 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 240 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 143 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 583 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 422 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 363 bp overlap

ChIP hESC GSE18292.NANOG.hESC 279 bp overlap

NR1H2::RXRA 1 dataset

Motif DE_24h DE_24h-NR1H2RXRA_MA0115.1 17 bp overlap

NR1I2 1 dataset

Motif DE_24h DE_24h-NR1I2_MA1533.2 15 bp overlap

NR2C1 1 dataset

Motif DE_24h DE_24h-NR2C1_MA1535.2 6 bp overlap

NR2C2 2 datasets

Motif DE_24h DE_24h-NR2C2_MA0504.2 14 bp overlap

Motif DE_24h DE_24h-NR2C2_MA1536.2 6 bp overlap

NR2F1 2 datasets

Motif DE_24h DE_24h-NR2F1_MA0017.3 12 bp overlap

Motif DE_24h DE_24h-NR2F1_MA1537.2 13 bp overlap

NR4A1 1 dataset

Motif DE_24h DE_24h-NR4A1_MA1112.3 8 bp overlap

NR4A2 1 dataset

Motif DE_24h DE_24h-NR4A2_MA0160.3 8 bp overlap

Nr1H2 1 dataset

Motif DE_24h DE_24h-Nr1H2_MA1996.2 6 bp overlap

Nr1H4 1 dataset

Motif DE_24h DE_24h-Nr1H4_MA1110.3 6 bp overlap

Nr1h3 1 dataset

Motif DE_24h DE_24h-Nr1h3_MA2337.1 6 bp overlap

Nr2f6 1 dataset

Motif DE_24h DE_24h-Nr2f6_MA0677.2 13 bp overlap

PATZ1 1 dataset

Motif DE_24h DE_24h-PATZ1_MA1961.2 11 bp overlap

POU5F1 1 dataset

ChIP DE_D1 DED1-OCT4_Batch_II 518 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 582 bp overlap

PPARA::RXRA 1 dataset

Motif DE_24h DE_24h-PPARARXRA_MA1148.2 17 bp overlap

PPARD 1 dataset

Motif DE_24h DE_24h-PPARD_MA1550.2 14 bp overlap

PRDM1 1 dataset

ChIP fetal_testis GSE100639.PRDM1.fetal_testis 155 bp overlap

PRDM9 1 dataset

Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap

PTBP1 1 dataset

ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 156 bp overlap

Pparg::Rxra 2 datasets

Motif DE_24h DE_24h-PpargRxra_MA0065.3 13 bp overlap

RBBP5 1 dataset

ChIP WA01 ENCSR000AQC.RBBP5.WA01 149 bp overlap

RBPJ 1 dataset

Motif DE_24h DE_24h-RBPJ_MA1116.2 6 bp overlap

RORB 1 dataset

Motif DE_24h DE_24h-RORB_MA1150.2 10 bp overlap

RXRA::VDR 1 dataset

Motif DE_24h DE_24h-RXRAVDR_MA0074.1 15 bp overlap

RXRB 1 dataset

Motif DE_24h DE_24h-RXRB_MA0855.1 14 bp overlap

RXRG 1 dataset

Motif DE_24h DE_24h-RXRG_MA0856.1 14 bp overlap

Rxra 1 dataset

Motif DE_24h DE_24h-Rxra_MA0512.2 14 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 561 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 583 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 583 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 525 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 505 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 554 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 583 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 565 bp overlap

SMAD3 2 datasets

ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap

ChIP endoderm GSE29422.SMAD3.endoderm 198 bp overlap

SMAD4 1 dataset

ChIP endoderm GSE29422.SMAD4.endoderm 188 bp overlap

SMARCC1 3 datasets

ChIP DE_D1 S10-DE-d1-BAF155-exp1 251 bp overlap

ChIP DE_D1 S15-DE-d1-BAF155-exp1 495 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 202 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 207 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 497 bp overlap

SP5 1 dataset

Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap

T 2 datasets

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 256 bp overlap

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 243 bp overlap

THAP1 1 dataset

ChIP K-562 ENCSR000BNN.THAP1.K-562 97 bp overlap

THRB 1 dataset

Motif DE_24h DE_24h-THRB_MA1574.2 13 bp overlap

TRIM28 1 dataset

ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 204 bp overlap

VDR 2 datasets

ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 255 bp overlap

ChIP THP-1_EtOH_1d GSE89431.VDR.THP-1_EtOH_1d 262 bp overlap

ZBTB18 1 dataset

Motif DE_24h DE_24h-ZBTB18_MA0698.2 11 bp overlap

ZBTB24 1 dataset

Motif DE_24h DE_24h-ZBTB24_MA2330.1 10 bp overlap

ZFP14 1 dataset

Motif DE_24h DE_24h-ZFP14_MA1972.1 15 bp overlap

ZKSCAN5 1 dataset

Motif DE_24h DE_24h-ZKSCAN5_MA1652.2 9 bp overlap

ZNF135 1 dataset

Motif DE_24h DE_24h-ZNF135_MA1587.1 14 bp overlap

ZNF143 1 dataset

ChIP Hep-G2 ENCSR101FJT.ZNF143.Hep-G2 57 bp overlap

ZNF148 1 dataset

Motif DE_24h DE_24h-ZNF148_MA1653.2 10 bp overlap

ZNF257 1 dataset

Motif DE_24h DE_24h-ZNF257_MA1710.2 10 bp overlap

ZNF320 1 dataset

Motif DE_24h DE_24h-ZNF320_MA1976.2 20 bp overlap

ZNF460 1 dataset

Motif DE_24h DE_24h-ZNF460_MA1596.1 16 bp overlap

ZNF524 1 dataset

Motif DE_24h DE_24h-ZNF524_MA2096.1 9 bp overlap

ZNF534 1 dataset

ChIP HEK293T GSE78099.ZNF534.HEK293T 128 bp overlap

ZNF75A 1 dataset

Motif DE_24h DE_24h-ZNF75A_MA2097.1 12 bp overlap

ZNF75D 1 dataset

Motif DE_24h DE_24h-ZNF75D_MA1601.2 12 bp overlap

Zfp335 1 dataset

Motif DE_24h DE_24h-Zfp335_MA2002.2 7 bp overlap

Znf423 1 dataset

Motif DE_24h DE_24h-Znf423_MA0116.1 15 bp overlap