chr1 : 236,129,346 236,129,682
336 bp 50 TFs 0 linked genes
This 336 bp open chromatin element has no linked target genes and is bound by 50 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:236,124,346 – 236,134,682
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
50 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 336 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 264 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 271 bp overlap
BRD4 5 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 336 bp overlap
ChIP CHL-1_BAY123897 GSE95585.BRD4.CHL-1_BAY123897 235 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 233 bp overlap
ChIP HAP1 GSE108387.BRD4.HAP1 305 bp overlap
ChIP hESC GSE33281.BRD4.hESC 113 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 212 bp overlap
CTCF 33 datasets
ChIP COLO-829 GSE81945.CTCF.COLO-829 331 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 151 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 139 bp overlap
ChIP GM23338 ENCFF772DML 138 bp overlap
ChIP GSC23 GSE139416.CTCF.GSC23 213 bp overlap
ChIP H1 ENCFF764RHO 275 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 207 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 284 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 232 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 182 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 152 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 170 bp overlap
ChIP HEK293 ENCFF821TIC 336 bp overlap
ChIP HEK293 ENCSR617IFZ.CTCF.HEK293 253 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 128 bp overlap
ChIP HEK293T GSE103651.CTCF.HEK293T 71 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 110 bp overlap
ChIP HepG2 ENCFF127KUP 231 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 160 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 327 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 336 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 107 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 175 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 100 bp overlap
ChIP endodermal cell ENCFF471YCZ 213 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 270 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 273 bp overlap
ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 288 bp overlap
ChIP neural progenitor cell ENCFF420RBO 313 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 207 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 262 bp overlap
ChIP tibial-nerve ENCSR875NEW.CTCF.tibial-nerve 223 bp overlap
ChIP tibial-nerve ENCSR793YAD.CTCF.tibial-nerve 219 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 154 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 336 bp overlap
ESR2 1 dataset
Motif ES_0h ES_0h-ESR2_MA0258.2 15 bp overlap
EVI1 1 dataset
ChIP SKH1 GSE87283.EVI1.SKH1 168 bp overlap
EZH2 1 dataset
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 188 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 279 bp overlap
KLF4 1 dataset
ChIP WA09 GSE105028.KLF4.WA09 140 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 140 bp overlap
MAX 2 datasets
ChIP P493-6 GSE36354.MAX.P493-6 183 bp overlap
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 213 bp overlap
MED1 1 dataset
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 201 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 178 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 336 bp overlap
PGR 1 dataset
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 196 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 259 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 336 bp overlap
ChIP H1 ENCFF566JSR 336 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 196 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 336 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 222 bp overlap
PRDM1 1 dataset
Motif ES_0h ES_0h-PRDM1_MA0508.4 7 bp overlap
RAD21 1 dataset
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 250 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 142 bp overlap
RBPJ 2 datasets
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 249 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 202 bp overlap
SMARCA4 3 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 72 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 194 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 168 bp overlap
SMC1 1 dataset
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 216 bp overlap
SOX10 2 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX2 2 datasets
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 277 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 222 bp overlap
STAT3 1 dataset
ChIP A139 GSE85579.STAT3.A139 223 bp overlap
Sox11 2 datasets
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 57 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 336 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 333 bp overlap
TBP 2 datasets
ChIP hESC GSE122298.TBP.hESC 132 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 286 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 336 bp overlap
TEAD4 2 datasets
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 132 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 242 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 170 bp overlap
XRCC5 2 datasets
ChIP K-562 GSE120104.XRCC5.K-562 189 bp overlap
ChIP K-562 ENCSR506KWJ.XRCC5.K-562 181 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 125 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCFF524ADK 271 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 89 bp overlap
ZNF644 1 dataset
ChIP HepG2 ENCFF352VGJ 277 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 336 bp overlap
ZNF768 2 datasets
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
Motif ES_0h ES_0h-ZNF768_MA1731.2 9 bp overlap