chr1 : 233,917,952 233,918,613
661 bp 67 TFs 0 linked genes
This 661 bp open chromatin element has no linked target genes and is bound by 67 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:233,912,952 – 233,923,613
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 248 bp overlap
ARID1A 1 dataset
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 231 bp overlap
ARNTL 2 datasets
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 240 bp overlap
ChIP U2OS_trough_DMOG GSE85096.ARNTL.U2OS_trough_DMOG 229 bp overlap
ASCL1 1 dataset
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 109 bp overlap
BARX2 2 datasets
Motif DE_60h DE_60h-BARX2_MA1471.2 9 bp overlap
Motif DE_72h DE_72h-BARX2_MA1471.2 9 bp overlap
BCL11A 1 dataset
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 194 bp overlap
BRD4 6 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 216 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 291 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 291 bp overlap
ChIP PC-3 GSE137207.BRD4.PC-3 96 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 257 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 359 bp overlap
CREB1 1 dataset
ChIP A-549 ENCSR000BRB.CREB1.A-549 119 bp overlap
CREB3L1 1 dataset
Motif DE_60h DE_60h-CREB3L1_MA0839.2 13 bp overlap
CREB3L4 1 dataset
Motif DE_60h DE_60h-CREB3L4_MA1474.2 10 bp overlap
CTCF 1 dataset
ChIP retina_AB1-RB GSE86981.CTCF.retina_AB1-RB 184 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 285 bp overlap
Dmrt1 1 dataset
Motif DE_60h DE_60h-Dmrt1_MA1603.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 134 bp overlap
EP300 1 dataset
ChIP PC-3 GSE147455.EP300.PC-3 196 bp overlap
ESR1 1 dataset
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 240 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 224 bp overlap
FIGLA 1 dataset
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
GATA1 5 datasets
ChIP K-562 GSE107726.GATA1.K-562 287 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 125 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 172 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 174 bp overlap
ChIP K562 ENCFF094CMK 251 bp overlap
GATA2 2 datasets
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 336 bp overlap
GATA3 1 dataset
ChIP BE2C GSE65664.GATA3.BE2C 179 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 592 bp overlap
ChIP DE DE-GATA4-2 661 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 494 bp overlap
GATA5 1 dataset
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 13 datasets
ChIP AGS GSE51705.GATA6.AGS 169 bp overlap
ChIP DE DE-GATA6-1 575 bp overlap
ChIP DE DE-GATA6-2 661 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 263 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 352 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 447 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 609 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 473 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 413 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 607 bp overlap
ChIP foregut GSE117136.GATA6.foregut 419 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 269 bp overlap
Gata3 1 dataset
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HDAC2 1 dataset
ChIP PC-3 GSE147455.HDAC2.PC-3 154 bp overlap
HIC2 1 dataset
Motif DE_60h DE_60h-HIC2_MA0738.2 6 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 226 bp overlap
IRF4 1 dataset
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 85 bp overlap
Isl1 1 dataset
Motif DE_60h DE_60h-Isl1_MA1608.2 7 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 203 bp overlap
MED1 3 datasets
ChIP HCT-116 GSE121798.MED1.HCT-116 413 bp overlap
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 410 bp overlap
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 470 bp overlap
MGA 1 dataset
ChIP A-549_empty GSE112188.MGA.A-549_empty 207 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94822.MYCN.Kelly 144 bp overlap
MYOD1 1 dataset
Motif DE_72h DE_72h-MYOD1_MA0499.3 9 bp overlap
Mecom 1 dataset
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
NELFE 2 datasets
ChIP HeLa GSE125534.NELFE.HeLa 152 bp overlap
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 187 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 439 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 362 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 236 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 471 bp overlap
NKX6-3 1 dataset
Motif DE_60h DE_60h-NKX6-3_MA1530.2 8 bp overlap
ONECUT3 1 dataset
Motif DE_60h DE_60h-ONECUT3_MA0757.2 12 bp overlap
Ptf1A 1 dataset
Motif DE_72h DE_72h-Ptf1A_MA1620.2 8 bp overlap
REST 1 dataset
ChIP CD4 GSE49570.REST.CD4 152 bp overlap
RORC 1 dataset
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 255 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 502 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 133 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 563 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 354 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 409 bp overlap
SNAI2 1 dataset
Motif DE_72h DE_72h-SNAI2_MA0745.3 8 bp overlap
SOX10 1 dataset
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SP5 2 datasets
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
TAL1 2 datasets
ChIP K-562 GSE107726.TAL1.K-562 167 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 130 bp overlap
TCF7L2 2 datasets
ChIP PANC-1 ENCSR000EXL.TCF7L2.PANC-1 300 bp overlap
ChIP Panc1 ENCFF829HHL 569 bp overlap
THAP1 1 dataset
Motif DE_60h DE_60h-THAP1_MA0597.3 8 bp overlap
TRPS1 1 dataset
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
VENTX 1 dataset
Motif DE_60h DE_60h-VENTX_MA0724.1 9 bp overlap
Wt1 2 datasets
Motif DE_60h DE_60h-Wt1_MA1627.2 10 bp overlap
Motif DE_72h DE_72h-Wt1_MA1627.2 10 bp overlap
XBP1 1 dataset
Motif DE_60h DE_60h-XBP1_MA0844.2 11 bp overlap
XRCC5 2 datasets
ChIP K-562 GSE120104.XRCC5.K-562 246 bp overlap
ChIP K-562 ENCSR506KWJ.XRCC5.K-562 153 bp overlap
YY1 1 dataset
ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 161 bp overlap
ZEB1 1 dataset
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZFP42 1 dataset
Motif DE_72h DE_72h-ZFP42_MA1651.2 13 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 145 bp overlap
ZNF708 1 dataset
Motif DE_72h DE_72h-ZNF708_MA1730.2 9 bp overlap
ZNF75A 1 dataset
Motif DE_72h DE_72h-ZNF75A_MA2097.1 12 bp overlap
Zfp335 1 dataset
Motif DE_72h DE_72h-Zfp335_MA2002.2 7 bp overlap