chr14 : 54,310,544 54,310,831
287 bp 56 TFs 0 linked genes
This 287 bp open chromatin element has no linked target genes and is bound by 56 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr14:54,305,544 – 54,315,831
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
56 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HCT-116 GSE47938.AFF4.HCT-116 286 bp overlap
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 205 bp overlap
Atoh1 1 dataset
Motif DE_48h DE_48h-Atoh1_MA1467.3 7 bp overlap
BRD4 14 datasets
ChIP HCC1806_DMSO_24h GSE87418.BRD4.HCC1806_DMSO_24h 241 bp overlap
ChIP HCT-116 GSE57628.BRD4.HCT-116 196 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 63 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 63 bp overlap
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 287 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 287 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 194 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 236 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 151 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 93 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 113 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 267 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 287 bp overlap
ChIP SW480 GSE73319.BRD4.SW480 287 bp overlap
CDK8 1 dataset
ChIP HCT-116_NOMO GSE38258.CDK8.HCT-116_NOMO 129 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE132705.CDK9.HCT-116 170 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 177 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 175 bp overlap
E2F6 2 datasets
Motif DE_48h DE_48h-E2F6_MA0471.3 8 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 137 bp overlap
E2F7 1 dataset
Motif DE_48h DE_48h-E2F7_MA0758.1 14 bp overlap
ELF1 1 dataset
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 62 bp overlap
ELF3 2 datasets
ChIP PDAC GSE64557.ELF3.PDAC 53 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 103 bp overlap
ERG 1 dataset
ChIP RWPE-1 GSE114241.ERG.RWPE-1 156 bp overlap
ESR1 1 dataset
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 180 bp overlap
FERD3L 1 dataset
Motif DE_48h DE_48h-FERD3L_MA1485.1 14 bp overlap
FOXA1 3 datasets
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 52 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 120 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 88 bp overlap
FOXH1 1 dataset
Motif DE_48h DE_48h-FOXH1_MA0479.2 8 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 287 bp overlap
ChIP DE DE-GATA4-2 287 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 200 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 287 bp overlap
ChIP DE DE-GATA6-2 287 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 287 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 287 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 287 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 287 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 287 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 287 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 287 bp overlap
GLIS2 2 datasets
ChIP HCT-116_5FU GSE125927.GLIS2.HCT-116_5FU 243 bp overlap
ChIP HCT-116_DMSO GSE125927.GLIS2.HCT-116_DMSO 177 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 287 bp overlap
HAND2 1 dataset
Motif DE_48h DE_48h-HAND2_MA1638.2 6 bp overlap
HNF4A 1 dataset
ChIP HCT-116_TCF4 GSE62890.HNF4A.HCT-116_TCF4 91 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 287 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 250 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 287 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 287 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 196 bp overlap
MED1 1 dataset
ChIP SUM159PT_300nMJQ1_24h GSE87418.MED1.SUM159PT_300nMJQ1_24h 137 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 138 bp overlap
MXI1 1 dataset
Motif DE_48h DE_48h-MXI1_MA1108.3 6 bp overlap
MYB 1 dataset
ChIP MOLT-3 GSE59657.MYB.MOLT-3 195 bp overlap
Msgn1 1 dataset
Motif DE_48h DE_48h-Msgn1_MA1524.3 10 bp overlap
NFIC 1 dataset
Motif DE_48h DE_48h-NFIC_MA1527.2 15 bp overlap
NFIX 1 dataset
Motif DE_48h DE_48h-NFIX_MA1528.2 14 bp overlap
NIPBL 1 dataset
ChIP HCT-116_RAD21-mAC GSE104888.NIPBL.HCT-116_RAD21-mAC 152 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 174 bp overlap
NR3C1 4 datasets
ChIP BEAS-2B_DEX GSE125623.NR3C1.BEAS-2B_DEX 103 bp overlap
ChIP BEAS-2B_DEX_IA1 GSE125623.NR3C1.BEAS-2B_DEX_IA1 103 bp overlap
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 190 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 204 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 218 bp overlap
POLR2A 1 dataset
ChIP endothelial cell of umbilical vein ENCFF303XUJ 92 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 128 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 272 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 287 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 287 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 287 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 287 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 287 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 287 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 287 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 287 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 228 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 228 bp overlap
SUPT6H 1 dataset
ChIP HCT-116 GSE130509.SUPT6H.HCT-116 135 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 246 bp overlap
TCF7L2 5 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 241 bp overlap
ChIP HCT116 ENCFF038POZ 200 bp overlap
ChIP HeLa-S3 ENCFF673QAB 122 bp overlap
ChIP HeLa-S3 ENCSR000EVE.TCF7L2.HeLa-S3 114 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 185 bp overlap
TP53 3 datasets
Motif DE_48h DE_48h-TP53_MA0106.3 18 bp overlap
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 108 bp overlap
ChIP SW480_shp53_16h_TNF-a GSE115985.TP53.SW480_shp53_16h_TNF-a 69 bp overlap
TP73 1 dataset
Motif DE_48h DE_48h-TP73_MA0861.2 16 bp overlap
TWIST1 1 dataset
Motif DE_48h DE_48h-TWIST1_MA1123.3 8 bp overlap
ZBTB18 1 dataset
Motif DE_48h DE_48h-ZBTB18_MA0698.2 11 bp overlap
ZC3H8 1 dataset
ChIP HCT-116 GSE47938.ZC3H8.HCT-116 201 bp overlap
Zfp961 1 dataset
Motif DE_48h DE_48h-Zfp961_MA2126.1 8 bp overlap
Zic2 1 dataset
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap