chr14 : 54,187,126 54,188,017
891 bp 54 TFs 3 linked genes
This 891 bp open chromatin element is linked to CDKN3, BMP4, and CNIH1 and is bound by 54 transcription factors.
Linked Genes
3 genes
Link type
Gene Expression Dist. to TSS Distance Link type
CDKN3 209.4 kb Distal Multiome
BMP4 230.8 kb Distal Multiome+HiCAR
CNIH1 253.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr14:54,182,126 – 54,193,017
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 166 bp overlap
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 285 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 142 bp overlap
BRD4 6 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 326 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 50 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 137 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 374 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 401 bp overlap
ChIP SW480 GSE73319.BRD4.SW480 157 bp overlap
CASZ1 2 datasets
ChIP rhabdomyosarcoma_Ctrl GSE126142.CASZ1.rhabdomyosarcoma_Ctrl 261 bp overlap
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 121 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D40 GSE139377.ERG.aortic-endothelial-cell_D40 165 bp overlap
FOXA1 2 datasets
ChIP LS180 GSE140533.FOXA1.LS180 51 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 198 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 526 bp overlap
ChIP DE DE-FOXA2-2 440 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 251 bp overlap
GATA1 1 dataset
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 55 bp overlap
GATA2 3 datasets
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 221 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 191 bp overlap
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 242 bp overlap
GATA3 2 datasets
ChIP Kelly GSE65664.GATA3.Kelly 321 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 231 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 697 bp overlap
ChIP DE DE-GATA4-2 555 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 508 bp overlap
ChIP DE DE-GATA6-2 550 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 612 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 815 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 631 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 699 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 891 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 790 bp overlap
ChIP foregut GSE117136.GATA6.foregut 284 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 305 bp overlap
HAND2 5 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 231 bp overlap
Motif DE_48h DE_48h-HAND2_MA1638.2 6 bp overlap
Motif DE_72h DE_72h-HAND2_MA1638.2 6 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 302 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 682 bp overlap
HNRNPK 5 datasets
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 136 bp overlap
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 136 bp overlap
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 390 bp overlap
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 387 bp overlap
ChIP HepG2 ENCFF493GNS 511 bp overlap
HOXB13 2 datasets
ChIP G-401 GSE65381.HOXB13.G-401 683 bp overlap
ChIP G-401 GSE65381.HOXB13.G-401 102 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 80 bp overlap
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 376 bp overlap
MNT 2 datasets
ChIP Hep-G2 ENCSR261EDU.MNT.Hep-G2 290 bp overlap
ChIP HepG2 ENCFF701PYP 351 bp overlap
MYCN 2 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 276 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 657 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 480 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 208 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 192 bp overlap
PKNOX1 1 dataset
ChIP HEK293T ENCFF174WDB 77 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 229 bp overlap
PRDM14 1 dataset
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 267 bp overlap
SIX2 4 datasets
ChIP HEK GSE73865.SIX2.HEK 891 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 96 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 336 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 891 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 191 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 678 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 798 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 417 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 700 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 467 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 137 bp overlap
SMARCA4 7 datasets
ChIP NGP GSE134626.SMARCA4.NGP 82 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 130 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 305 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCA4.TTC-549_Dox 120 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCA4.TTC-549_Dox 335 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCA4.TTC-549_NoDox 64 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCA4.TTC-549_NoDox 508 bp overlap
SMARCC1 1 dataset
ChIP G-401_NoDox GSE71504.SMARCC1.G-401_NoDox 275 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 461 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 815 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 75 bp overlap
SREBF1 2 datasets
Motif DE_48h DE_48h-SREBF1_MA0829.3 10 bp overlap
Motif DE_72h DE_72h-SREBF1_MA0829.3 10 bp overlap
STAT3 1 dataset
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 191 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 213 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 225 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 328 bp overlap
TCF7L2 3 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 295 bp overlap
ChIP HCT116 ENCFF038POZ 224 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 172 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 289 bp overlap
TFAP2A 2 datasets
Motif DE_72h DE_72h-TFAP2A_MA0810.2 11 bp overlap
ChIP WA09 GSE105081.TFAP2A.WA09 296 bp overlap
TWIST1 4 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 147 bp overlap
Motif DE_48h DE_48h-TWIST1_MA1123.3 8 bp overlap
Motif DE_72h DE_72h-TWIST1_MA1123.3 8 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 147 bp overlap
Tfcp2l1 2 datasets
Motif DE_48h DE_48h-Tfcp2l1_MA0145.2 14 bp overlap
Motif DE_72h DE_72h-Tfcp2l1_MA0145.2 14 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 310 bp overlap
ZBTB24 2 datasets
Motif DE_48h DE_48h-ZBTB24_MA2330.1 10 bp overlap
Motif DE_72h DE_72h-ZBTB24_MA2330.1 10 bp overlap
ZNF143 2 datasets
ChIP MCF-7 GSE76454.ZNF143.MCF-7 295 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 205 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 347 bp overlap
ZNF263 2 datasets
ChIP HEK293T GSE78099.ZNF263.HEK293T 227 bp overlap
ChIP Hep-G2 ENCSR313MMD.ZNF263.Hep-G2 103 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 133 bp overlap
ZNF530 2 datasets
Motif DE_48h DE_48h-ZNF530_MA1981.2 14 bp overlap
Motif DE_72h DE_72h-ZNF530_MA1981.2 14 bp overlap
ZNF574 2 datasets
Motif DE_48h DE_48h-ZNF574_MA1982.2 14 bp overlap
Motif DE_72h DE_72h-ZNF574_MA1982.2 14 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 389 bp overlap
ZNF823 1 dataset
ChIP HEK293T GSE78099.ZNF823.HEK293T 378 bp overlap