chr13 : 106,525,955 – 106,526,233
278 bp 63 TFs 1 linked gene
This 278 bp open chromatin element is linked to EFNB2 and is bound by 63 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
EFNB2 9.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:106,520,955 – 106,531,233
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
63 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 ERP001226.AR.MCF-7 167 bp overlap
ARID1A 3 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 278 bp overlap
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 215 bp overlap
ChIP MCF-7_JQ1 GSE123284.ARID1A.MCF-7_JQ1 183 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
BRD4 3 datasets
ChIP COLO-205 GSE73319.BRD4.COLO-205 86 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 170 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 182 bp overlap
Bach1::Mafk 1 dataset
Motif DE_12h DE_12h-Bach1Mafk_MA0591.2 12 bp overlap
CREBBP 2 datasets
ChIP MCF-7 ERP000901.CREBBP.MCF-7 190 bp overlap
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 278 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 278 bp overlap
ESR1 10 datasets
ChIP MCF-7 GSE41561.ESR1.MCF-7 167 bp overlap
ChIP MCF-7_HC11 GSE102882.ESR1.MCF-7_HC11 212 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 264 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 93 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 86 bp overlap
ChIP MCF-7_estradiol-progesterone_4h GSE99626.ESR1.MCF-7_estradiol-progesterone_4h 179 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 278 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 127 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 169 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 87 bp overlap
ESR1_pS118 1 dataset
ChIP MCF-7_E2_sc GSE117569.ESR1_pS118.MCF-7_E2_sc 278 bp overlap
ETV5::FOXO1 1 dataset
Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 223 bp overlap
FOXA1 13 datasets
Motif DE_12h DE_12h-FOXA1_MA0148.5 8 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 183 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 176 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 167 bp overlap
ChIP MCF-7_1117 GSE124667.FOXA1.MCF-7_1117 197 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 194 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 134 bp overlap
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 135 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 187 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 237 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 271 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 218 bp overlap
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 188 bp overlap
FOXD2 1 dataset
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
FOXE1 1 dataset
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
FOXO1::FLI1 1 dataset
Motif DE_12h DE_12h-FOXO1FLI1_MA1956.2 13 bp overlap
FOXP2 1 dataset
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
GRHL2 3 datasets
ChIP MCF-7 GSE109820.GRHL2.MCF-7 186 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 278 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 237 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 278 bp overlap
HOXC13 1 dataset
Motif DE_12h DE_12h-HOXC13_MA0907.2 9 bp overlap
Hand1 1 dataset
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
KLF1 2 datasets
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
KLF10 2 datasets
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF11 1 dataset
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
KLF14 2 datasets
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF16 1 dataset
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
KLF2 2 datasets
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 278 bp overlap
KLF4 4 datasets
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
ChIP PDAC GSE64557.KLF4.PDAC 278 bp overlap
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 189 bp overlap
KLF5 2 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
KLF9 1 dataset
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
MAFA 1 dataset
Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 168 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
MZF1 1 dataset
Motif DE_12h DE_12h-MZF1_MA0056.3 8 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 125 bp overlap
PATZ1 2 datasets
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PGR 1 dataset
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 278 bp overlap
PRDM14 1 dataset
ChIP hESC GSE22767.PRDM14.hESC 130 bp overlap
REST 1 dataset
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMARCA4 1 dataset
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 253 bp overlap
SP3 1 dataset
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
SPI1 1 dataset
ChIP OCI-Ly3_SHCTR GSE56857.SPI1.OCI-Ly3_SHCTR 213 bp overlap
STAG1 1 dataset
ChIP MCF-7_E2_SHCTCF ERP000209.STAG1.MCF-7_E2_SHCTCF 114 bp overlap
STAT3 6 datasets
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 104 bp overlap
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 255 bp overlap
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 278 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 278 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 191 bp overlap
ChIP MCF-7_jc5842 GSE126004.STAT3.MCF-7_jc5842 170 bp overlap
SUPT5H 1 dataset
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 160 bp overlap
TFAP2A 2 datasets
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 2 datasets
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 5 datasets
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 173 bp overlap
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 168 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 278 bp overlap
TFAP2E 1 dataset
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZNF143 2 datasets
ChIP MCF-7 GSE76454.ZNF143.MCF-7 178 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 221 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF416 1 dataset
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
ZNF449 1 dataset
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
ZNF454 1 dataset
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
ZNF692 1 dataset
Motif DE_12h DE_12h-ZNF692_MA1986.2 8 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 276 bp overlap
ZNF766 1 dataset
Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap
ZXDC 1 dataset
ChIP MCF-7 GSE97661.ZXDC.MCF-7 189 bp overlap
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