chr13 : 66,226,396 – 66,226,957

561 bp 87 TFs 1 linked gene

This 561 bp open chromatin element is linked to MIR4704 and is bound by 87 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
MIR4704		8.1 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

87 transcription factors

Atoh1 1 dataset

Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap

CDX2 1 dataset

Motif DE_12h DE_12h-CDX2_MA0465.3 8 bp overlap

CREB1 2 datasets

Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap

CTCF 1 dataset

Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF262VBH 329 bp overlap

DUX4 1 dataset

Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap

E2F8 1 dataset

Motif DE_12h DE_12h-E2F8_MA0865.3 9 bp overlap

FIGLA 1 dataset

Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap

FOS 1 dataset

Motif DE_12h DE_12h-FOS_MA1951.2 13 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 181 bp overlap

ChIP DE DE-FOXA2-2 156 bp overlap

FOXD2 1 dataset

Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap

FOXF2 1 dataset

Motif DE_12h DE_12h-FOXF2_MA0030.2 9 bp overlap

FOXH1 1 dataset

Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap

FOXK1 1 dataset

Motif DE_12h DE_12h-FOXK1_MA0852.3 7 bp overlap

FOXK2 1 dataset

Motif DE_12h DE_12h-FOXK2_MA1103.3 7 bp overlap

FOXL1 1 dataset

Motif DE_12h DE_12h-FOXL1_MA0033.2 7 bp overlap

FOXO4 1 dataset

Motif DE_12h DE_12h-FOXO4_MA0848.1 7 bp overlap

FOXO6 1 dataset

Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap

FOXP2 1 dataset

Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap

FOXP3 1 dataset

Motif DE_12h DE_12h-FOXP3_MA0850.1 7 bp overlap

Foxf1 1 dataset

Motif DE_12h DE_12h-Foxf1_MA1606.2 7 bp overlap

Foxo1 1 dataset

Motif DE_12h DE_12h-Foxo1_MA0480.3 7 bp overlap

Foxo3 1 dataset

Motif DE_12h DE_12h-Foxo3_MA0157.4 7 bp overlap

Foxq1 1 dataset

Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap

GATA6 3 datasets

ChIP DE DE-GATA6-2 69 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 279 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 344 bp overlap

GCM1 1 dataset

Motif DE_12h DE_12h-GCM1_MA0646.2 10 bp overlap

GCM2 1 dataset

Motif DE_12h DE_12h-GCM2_MA0767.2 8 bp overlap

HAND2 1 dataset

Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap

HIC2 1 dataset

Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap

HOXB13 1 dataset

Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap

Hoxa13 1 dataset

Motif DE_12h DE_12h-Hoxa13_MA0650.4 8 bp overlap

Irf1 1 dataset

Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap

JUN 3 datasets

Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 441 bp overlap

KLF1 1 dataset

Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap

KLF2 1 dataset

Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap

KLF4 1 dataset

Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap

MAFF 1 dataset

Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap

MAFK 1 dataset

Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap

MEIS1 3 datasets

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

Motif DE_12h DE_12h-MEIS1_MA1639.2 9 bp overlap

MGA::EVX1 1 dataset

Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap

Mafb 1 dataset

Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap

NANOG 2 datasets

ChIP GM23338 ENCFF065NZG 311 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 128 bp overlap

NEUROD1 1 dataset

Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap

NEUROG2 1 dataset

Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap

NRL 1 dataset

Motif DE_12h DE_12h-NRL_MA0842.3 12 bp overlap

Neurod2 1 dataset

Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap

Nr1h3::Rxra 1 dataset

Motif DE_12h DE_12h-Nr1h3Rxra_MA0494.2 16 bp overlap

PATZ1 1 dataset

Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap

PKNOX2 1 dataset

Motif DE_12h DE_12h-PKNOX2_MA0783.1 12 bp overlap

POU1F1 1 dataset

Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap

POU2F2 1 dataset

Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap

POU3F2 1 dataset

Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap

POU3F3 1 dataset

Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap

POU5F1 1 dataset

ChIP DE_D1 DED1-OCT4_Batch_II 354 bp overlap

PPARG 1 dataset

Motif DE_12h DE_12h-PPARG_MA0066.2 19 bp overlap

Plagl1 1 dataset

Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap

RXRA::VDR 1 dataset

Motif DE_12h DE_12h-RXRAVDR_MA0074.1 15 bp overlap

SMAD2_3 2 datasets

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 357 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 441 bp overlap

SPIB 1 dataset

Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap

TBP 1 dataset

Motif DE_12h DE_12h-TBP_MA0108.3 7 bp overlap

TBX19 1 dataset

Motif DE_12h DE_12h-TBX19_MA0804.2 17 bp overlap

TEAD1 1 dataset

Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap

TEAD2 1 dataset

Motif DE_12h DE_12h-TEAD2_MA1121.2 7 bp overlap

TEAD3 1 dataset

Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap

TEAD4 1 dataset

Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap

TGIF1 1 dataset

Motif DE_12h DE_12h-TGIF1_MA0796.1 12 bp overlap

TGIF2 1 dataset

Motif DE_12h DE_12h-TGIF2_MA0797.1 12 bp overlap

TGIF2LX 1 dataset

Motif DE_12h DE_12h-TGIF2LX_MA1571.1 12 bp overlap

TGIF2LY 1 dataset

Motif DE_12h DE_12h-TGIF2LY_MA1572.1 12 bp overlap

THAP1 1 dataset

Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap

THRA 1 dataset

Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap

TWIST1 1 dataset

Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap

Wt1 1 dataset

Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap

Yy1 1 dataset

Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap

ZBTB7B 1 dataset

Motif DE_12h DE_12h-ZBTB7B_MA0694.2 10 bp overlap

ZBTB7C 1 dataset

Motif DE_12h DE_12h-ZBTB7C_MA0695.2 8 bp overlap

ZEB1 1 dataset

Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap

ZFP42 1 dataset

Motif DE_12h DE_12h-ZFP42_MA1651.2 13 bp overlap

ZIC1 1 dataset

Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap

ZIC4 1 dataset

Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap

ZIC5 1 dataset

Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap

ZNF16 1 dataset

Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap

ZNF354A 1 dataset

Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap

ZNF416 1 dataset

Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap

ZNF684 1 dataset

Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap

ZNF707 1 dataset

Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap

ZNF784 1 dataset

Motif DE_12h DE_12h-ZNF784_MA1717.2 8 bp overlap