chr13 : 50,014,486 – 50,014,839
353 bp 63 TFs 1 linked gene
This 353 bp open chromatin element is linked to KCNRG and is bound by 63 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
KCNRG 414 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:50,009,486 – 50,019,839
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
63 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 353 bp overlap
ChIP K562 ENCFF938UXQ 306 bp overlap
BCL11A 2 datasets
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 68 bp overlap
ChIP CD34_Day9_60min GSE104676.BCL11A.CD34_Day9_60min 89 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 244 bp overlap
ChIP K562 ENCFF963TXY 210 bp overlap
CBFA2T3 3 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 322 bp overlap
ChIP K-562 GSE142227.CBFA2T3.K-562 163 bp overlap
ChIP K562 ENCFF673OEZ 276 bp overlap
CCNT2 1 dataset
ChIP K-562 ENCSR000DOA.CCNT2.K-562 163 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 204 bp overlap
CTCF 31 datasets
ChIP GM04604 GSE148179.CTCF.GM04604 69 bp overlap
ChIP GM23338 ENCFF832KWE 113 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 72 bp overlap
ChIP HFFc6 ENCFF005CJI 91 bp overlap
ChIP SK-N-SH ENCFF575DMG 141 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 151 bp overlap
ChIP SLK_RAD21-KD GSE138105.CTCF.SLK_RAD21-KD 154 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 152 bp overlap
ChIP body of pancreas ENCFF756FGB 90 bp overlap
ChIP chondrocyte ENCFF134ORZ 104 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF662EUG 92 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF756TDJ 141 bp overlap
ChIP esophagus squamous epithelium ENCFF037IYT 99 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 57 bp overlap
ChIP gastroesophageal sphincter ENCFF569YIT 100 bp overlap
ChIP gastroesophageal sphincter ENCFF582GAX 52 bp overlap
ChIP gastroesophageal-sphincter ENCSR206ETG.CTCF.gastroesophageal-sphincter 61 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 76 bp overlap
ChIP heart ENCSR565HBN.CTCF.heart 65 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 59 bp overlap
ChIP heart ENCSR778ZPK.CTCF.heart 57 bp overlap
ChIP heart left ventricle ENCFF505HGD 88 bp overlap
ChIP heart left ventricle ENCFF663LEI 95 bp overlap
ChIP heart left ventricle ENCFF888ERQ 144 bp overlap
ChIP heart right ventricle ENCFF022KFI 61 bp overlap
ChIP nephron ENCFF972IQB 94 bp overlap
ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 64 bp overlap
ChIP right atrium auricular region ENCFF696NTN 110 bp overlap
ChIP thoracic aorta ENCFF012WJQ 120 bp overlap
ChIP transverse colon ENCFF594PFO 96 bp overlap
ChIP upper lobe of left lung ENCFF277NLT 130 bp overlap
DACH1 1 dataset
ChIP K562 ENCFF574LOW 292 bp overlap
DPF2 3 datasets
ChIP K-562 ENCSR219BXP.DPF2.K-562 255 bp overlap
ChIP K562 ENCFF739JDE 330 bp overlap
ChIP K562 ENCFF775HUO 211 bp overlap
E2F8 1 dataset
ChIP GM12878 ENCSR793HVL.E2F8.GM12878 236 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 194 bp overlap
EP300 2 datasets
ChIP K-562 ENCSR000EGE.EP300.K-562 200 bp overlap
ChIP K562 ENCFF226VMS 292 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 285 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 278 bp overlap
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 263 bp overlap
ChIP DE DE-FOXA2-1 353 bp overlap
ChIP DE DE-FOXA2-2 312 bp overlap
FOXK2 1 dataset
ChIP K-562 ENCSR508DQA.FOXK2.K-562 219 bp overlap
FOXM1 2 datasets
ChIP K-562 ENCSR429QPP.FOXM1.K-562 244 bp overlap
ChIP K562 ENCFF255RHV 306 bp overlap
GATA1 14 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 353 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 233 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 236 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 176 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 273 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 171 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 220 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 214 bp overlap
ChIP K562 ENCFF094CMK 234 bp overlap
ChIP erythroblast ENCFF867JAR 188 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 353 bp overlap
ChIP erythroid-progenitor_EPrec GSE124163.GATA1.erythroid-progenitor_EPrec 203 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 301 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 296 bp overlap
GATA2 4 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 196 bp overlap
ChIP K-562 ENCSR000BKM.GATA2.K-562 210 bp overlap
ChIP K562 ENCFF544PCK 228 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 175 bp overlap
GATA4 3 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 245 bp overlap
ChIP DE DE-GATA4-1 338 bp overlap
ChIP DE DE-GATA4-2 353 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 353 bp overlap
ChIP DE DE-GATA6-2 353 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 239 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 353 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 341 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 271 bp overlap
GATAD2B 3 datasets
ChIP K-562 ENCSR547LKC.GATAD2B.K-562 324 bp overlap
ChIP K562 ENCFF696VMK 298 bp overlap
ChIP K562 ENCFF696VMK 256 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 126 bp overlap
HDAC1 3 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 353 bp overlap
ChIP K562 ENCFF968WBH 346 bp overlap
ChIP K562 ENCFF968WBH 322 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 269 bp overlap
HDAC3 1 dataset
ChIP K-562 ENCSR024LKA.HDAC3.K-562 236 bp overlap
HMBOX1 3 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 353 bp overlap
ChIP K562 ENCFF055GAZ 353 bp overlap
ChIP K562 ENCFF317JJX 353 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 348 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 283 bp overlap
ILF3 2 datasets
ChIP K-562 GSE103215.ILF3.K-562 320 bp overlap
ChIP K-562 ENCSR632TJQ.ILF3.K-562 256 bp overlap
JUND 1 dataset
ChIP K-562 ENCSR000EGN.JUND.K-562 114 bp overlap
KDM1A 3 datasets
ChIP K-562 ENCSR360HRA.KDM1A.K-562 212 bp overlap
ChIP K562 ENCFF128TYE 272 bp overlap
ChIP K562 ENCFF133OLU 353 bp overlap
KLF16 2 datasets
ChIP K-562 ENCSR760UVO.KLF16.K-562 154 bp overlap
ChIP K562 ENCFF464PIV 246 bp overlap
LDB1 2 datasets
ChIP HEP GSE52637.LDB1.HEP 229 bp overlap
ChIP K-562 GSE142227.LDB1.K-562 255 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 267 bp overlap
ChIP K562 ENCFF320GSD 181 bp overlap
MLLT1_FKB 1 dataset
ChIP MV4-11 GSE82116.MLLT1_FKB.MV4-11 249 bp overlap
MTA2 2 datasets
ChIP K-562 ENCSR113LAS.MTA2.K-562 264 bp overlap
ChIP K562 ENCFF880VZB 283 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 289 bp overlap
NCOR1 4 datasets
ChIP K-562 ENCSR910JAI.NCOR1.K-562 353 bp overlap
ChIP K-562 ENCSR798ILC.NCOR1.K-562 273 bp overlap
ChIP K562 ENCFF788MPU 218 bp overlap
ChIP K562 ENCFF866HRM 198 bp overlap
NFIC 2 datasets
ChIP K-562 ENCSR796ITY.NFIC.K-562 215 bp overlap
ChIP K562 ENCFF167YID 138 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 185 bp overlap
PKNOX1 2 datasets
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 263 bp overlap
ChIP K562 ENCFF236IUS 330 bp overlap
PML 2 datasets
ChIP K-562 ENCSR000BQY.PML.K-562 212 bp overlap
ChIP K562 ENCFF801LKH 352 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 311 bp overlap
RNF2 2 datasets
ChIP K562 ENCFF653BQJ 353 bp overlap
ChIP K562 ENCFF653BQJ 280 bp overlap
SMAD1 1 dataset
ChIP CD34_ERYTH_BMP GSE29194.SMAD1.CD34_ERYTH_BMP 134 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 353 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 263 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 353 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 265 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 321 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 353 bp overlap
SMAD3 1 dataset
ChIP SUM159PT GSE130364.SMAD3.SUM159PT 353 bp overlap
SMARCA4 1 dataset
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 337 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 214 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 202 bp overlap
ChIP K562 ENCFF059YCJ 324 bp overlap
STAT5A 1 dataset
ChIP K-562 ENCSR000BRR.STAT5A.K-562 132 bp overlap
SUPT5H 3 datasets
ChIP HCT-116_DMSO_pThr806 GSE138548.SUPT5H.HCT-116_DMSO_pThr806 156 bp overlap
ChIP MOLT-4_SNS GSE89384.SUPT5H.MOLT-4_SNS 314 bp overlap
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 104 bp overlap
TAL1 16 datasets
ChIP CD34 GSE52924.TAL1.CD34 229 bp overlap
ChIP HSPC-CD34pos GSE93372.TAL1.HSPC-CD34pos 353 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 290 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 233 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 290 bp overlap
ChIP K-562_MYO1D-Hub_KO GSE107726.TAL1.K-562_MYO1D-Hub_KO 242 bp overlap
ChIP K-562_MYO1D-Non-hub_KO GSE107726.TAL1.K-562_MYO1D-Non-hub_KO 168 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 228 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 247 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 246 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 251 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 248 bp overlap
ChIP K562 ENCFF620GMX 251 bp overlap
ChIP K562 ENCFF661CCK 161 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 270 bp overlap
ChIP erythroid GSE42390.TAL1.erythroid 231 bp overlap
TBX5 1 dataset
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 319 bp overlap
TCF12 4 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 293 bp overlap
ChIP K-562 ENCSR189TRZ.TCF12.K-562 249 bp overlap
ChIP K562 ENCFF909RDY 323 bp overlap
ChIP K562 ENCFF931DJY 223 bp overlap
TCF3 2 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 288 bp overlap
ChIP K562 ENCFF319QZT 207 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 190 bp overlap
TRIM24 2 datasets
ChIP K-562 ENCSR907MZR.TRIM24.K-562 211 bp overlap
ChIP K562 ENCFF616RIL 353 bp overlap
USF1 1 dataset
ChIP K-562 ENCSR000BKT.USF1.K-562 139 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 299 bp overlap
ZNF22 1 dataset
ChIP HEK293 GSE76494.ZNF22.HEK293 133 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 109 bp overlap
Huangfu Lab · Publications · Resources · Contact