chr12 : 111,339,291 111,339,878
587 bp 62 TFs 2 linked genes
This 587 bp open chromatin element is linked to RNA5SP373 and ATXN2 and is bound by 62 transcription factors.
Linked Genes
2 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
RNA5SP373 at TSS At TSS Proximity
ATXN2 259.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:111,334,291 – 111,344,878
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
62 transcription factors
Source
Cell type
AR 1 dataset
ChIP 22Rv1 GSE85558.AR.22Rv1 142 bp overlap
Bach1::Mafk 2 datasets
Motif DE_36h DE_36h-Bach1Mafk_MA0591.2 12 bp overlap
Motif DE_72h DE_72h-Bach1Mafk_MA0591.2 12 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 175 bp overlap
CHD8 1 dataset
ChIP T-47D_R5020_5 GSE62428.CHD8.T-47D_R5020_5 261 bp overlap
CREB1 1 dataset
ChIP A-549 ENCSR000BRB.CREB1.A-549 214 bp overlap
DNMT3B 1 dataset
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 179 bp overlap
E2F7 2 datasets
Motif DE_36h DE_36h-E2F7_MA0758.1 14 bp overlap
Motif DE_72h DE_72h-E2F7_MA0758.1 14 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 361 bp overlap
ESR1 15 datasets
ChIP MCF-7 GSE117492.ESR1.MCF-7 242 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 347 bp overlap
ChIP MCF-7_E2 GSE73956.ESR1.MCF-7_E2 238 bp overlap
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 155 bp overlap
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 145 bp overlap
ChIP MCF-7_E2 GSE86538.ESR1.MCF-7_E2 140 bp overlap
ChIP MCF-7_E2-10min-ERalpha GSE94023.ESR1.MCF-7_E2-10min-ERalpha 256 bp overlap
ChIP MCF-7_E2-80min-ERalpha GSE94023.ESR1.MCF-7_E2-80min-ERalpha 157 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 162 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 211 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 207 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 167 bp overlap
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 213 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 250 bp overlap
ChIP VCaP_E2_ERA GSE43985.ESR1.VCaP_E2_ERA 207 bp overlap
ESR1_Y537N 2 datasets
ChIP MCF-7_dox GSE94493.ESR1_Y537N.MCF-7_dox 268 bp overlap
ChIP MCF-7_dox_E2 GSE94493.ESR1_Y537N.MCF-7_dox_E2 216 bp overlap
ESR1_Y537S 2 datasets
ChIP MCF-7_E2 GSE94493.ESR1_Y537S.MCF-7_E2 250 bp overlap
ChIP MCF-7_dox GSE94493.ESR1_Y537S.MCF-7_dox 256 bp overlap
ESR2 1 dataset
ChIP MDA-MB-231_estradiol GSE108979.ESR2.MDA-MB-231_estradiol 155 bp overlap
EZH2 1 dataset
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 160 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 325 bp overlap
ChIP DE DE-FOXA2-1 587 bp overlap
ChIP DE DE-FOXA2-2 587 bp overlap
GABPA 1 dataset
ChIP VCaP GSE49091.GABPA.VCaP 189 bp overlap
GATA1 4 datasets
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 198 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 149 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 139 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 291 bp overlap
GATA2 7 datasets
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 172 bp overlap
GATA4 14 datasets
ChIP A-549 GSE85002.GATA4.A-549 350 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 251 bp overlap
ChIP DE DE-GATA4-1 587 bp overlap
ChIP DE DE-GATA4-2 587 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 364 bp overlap
ChIP foregut GSE117136.GATA4.foregut 587 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 421 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 404 bp overlap
GATA5 3 datasets
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 25 datasets
ChIP AGS GSE51705.GATA6.AGS 464 bp overlap
ChIP AGS GSE51936.GATA6.AGS 171 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 122 bp overlap
ChIP DE DE-GATA6-1 587 bp overlap
ChIP DE DE-GATA6-2 587 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 511 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 560 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 565 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 587 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 582 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 565 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 265 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 484 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 587 bp overlap
ChIP foregut GSE117136.GATA6.foregut 587 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 520 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 259 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 310 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 386 bp overlap
Gata3 6 datasets
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 139 bp overlap
HNF1B 1 dataset
ChIP foregut GSE117136.HNF1B.foregut 263 bp overlap
HNF4A 9 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 312 bp overlap
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 123 bp overlap
ChIP GP5D GSE51234.HNF4A.GP5D 362 bp overlap
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 266 bp overlap
ChIP Hep-G2 ENCSR000BLF.HNF4A.Hep-G2 121 bp overlap
ChIP HepG2 ENCFF146SSF 361 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 409 bp overlap
ChIP liver ENCFF354NRH 371 bp overlap
ChIP liver ENCFF449HPV 418 bp overlap
HNF4G 1 dataset
ChIP liver ENCSR297GII.HNF4G.liver 194 bp overlap
Hic1 6 datasets
Motif DE_36h DE_36h-Hic1_MA0739.2 8 bp overlap
Motif DE_36h DE_36h-Hic1_MA0739.2 8 bp overlap
Motif DE_48h DE_48h-Hic1_MA0739.2 8 bp overlap
Motif DE_48h DE_48h-Hic1_MA0739.2 8 bp overlap
Motif DE_72h DE_72h-Hic1_MA0739.2 8 bp overlap
Motif DE_72h DE_72h-Hic1_MA0739.2 8 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 486 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 247 bp overlap
MAFK 2 datasets
Motif DE_36h DE_36h-MAFK_MA0496.4 10 bp overlap
Motif DE_72h DE_72h-MAFK_MA0496.4 10 bp overlap
MEIS1 3 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 226 bp overlap
Mafg 2 datasets
Motif DE_36h DE_36h-Mafg_MA0659.4 12 bp overlap
Motif DE_72h DE_72h-Mafg_MA0659.4 12 bp overlap
Mecom 3 datasets
Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 284 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 304 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 254 bp overlap
NR5A1 3 datasets
Motif DE_36h DE_36h-NR5A1_MA1540.3 12 bp overlap
Motif DE_48h DE_48h-NR5A1_MA1540.3 12 bp overlap
Motif DE_72h DE_72h-NR5A1_MA1540.3 12 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 138 bp overlap
OSR2 2 datasets
Motif DE_36h DE_36h-OSR2_MA1646.2 8 bp overlap
Motif DE_72h DE_72h-OSR2_MA1646.2 8 bp overlap
POU2F1 1 dataset
ChIP T-47D GSE148277.POU2F1.T-47D 201 bp overlap
POU5F1 3 datasets
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 487 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 407 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 258 bp overlap
PRDM9 2 datasets
Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
RELA 6 datasets
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 322 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 170 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 170 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 185 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 328 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 307 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 281 bp overlap
SMAD2-3 4 datasets
ChIP HGrC1_EV GSE138496.SMAD2-3.HGrC1_EV 113 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 587 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 564 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 461 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 334 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 558 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 340 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 570 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 587 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 389 bp overlap
SMAD4 2 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 132 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 437 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 254 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 587 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 587 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 342 bp overlap
Sox6 3 datasets
Motif DE_36h DE_36h-Sox6_MA0515.1 10 bp overlap
Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 190 bp overlap
TAL1 1 dataset
ChIP CD34 GSE52924.TAL1.CD34 149 bp overlap
THRB 3 datasets
Motif DE_36h DE_36h-THRB_MA1576.2 18 bp overlap
Motif DE_48h DE_48h-THRB_MA1576.2 18 bp overlap
Motif DE_72h DE_72h-THRB_MA1576.2 18 bp overlap
TRPS1 6 datasets
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 213 bp overlap
ZNF324 1 dataset
Motif DE_72h DE_72h-ZNF324_MA1977.2 14 bp overlap
ZNF677 3 datasets
Motif DE_36h DE_36h-ZNF677_MA2101.1 12 bp overlap
Motif DE_48h DE_48h-ZNF677_MA2101.1 12 bp overlap
Motif DE_72h DE_72h-ZNF677_MA2101.1 12 bp overlap
ZNF76 2 datasets
Motif DE_36h DE_36h-ZNF76_MA1716.2 17 bp overlap
Motif DE_72h DE_72h-ZNF76_MA1716.2 17 bp overlap