chr12 : 58,087,439 – 58,088,060

621 bp 62 TFs 1 linked gene

This 621 bp open chromatin element is linked to LINC02403 and is bound by 62 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
LINC02403		at TSS	At TSS	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

62 transcription factors

CEBPD 1 dataset

ChIP K-562 ENCSR000BVY.CEBPD.K-562 85 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF460KDD 114 bp overlap

DPF1 1 dataset

ChIP K-562 GSE97661.DPF1.K-562 203 bp overlap

E2F6 3 datasets

ChIP H1 ENCFF785DWK 435 bp overlap

ChIP K-562 ENCSR000BLI.E2F6.K-562 111 bp overlap

ChIP WA01 ENCSR000BSI.E2F6.WA01 439 bp overlap

EOMES 1 dataset

Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap

ETV2::DRGX 2 datasets

Motif DE_12h DE_12h-ETV2DRGX_MA1940.2 12 bp overlap

Motif DE_24h DE_24h-ETV2DRGX_MA1940.2 12 bp overlap

ETV5::DRGX 2 datasets

Motif DE_12h DE_12h-ETV5DRGX_MA1944.2 12 bp overlap

Motif DE_24h DE_24h-ETV5DRGX_MA1944.2 12 bp overlap

ETV5::HOXA2 2 datasets

Motif DE_12h DE_12h-ETV5HOXA2_MA1948.2 12 bp overlap

Motif DE_24h DE_24h-ETV5HOXA2_MA1948.2 12 bp overlap

FOS 1 dataset

ChIP K-562 ENCSR000FAI.FOS.K-562 174 bp overlap

GATA6 2 datasets

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 264 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 276 bp overlap

HDAC3 1 dataset

ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 109 bp overlap

HOXB13 1 dataset

ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 172 bp overlap

HOXC13 1 dataset

Motif DE_12h DE_12h-HOXC13_MA0907.2 9 bp overlap

KLF13 1 dataset

Motif DE_12h DE_12h-KLF13_MA0657.2 17 bp overlap

KLF14 1 dataset

Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap

KLF16 1 dataset

Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap

KLF3 1 dataset

Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap

KLF5 1 dataset

Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap

L3MBTL2 1 dataset

ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 368 bp overlap

MAX 3 datasets

ChIP H1 ENCFF601FOM 325 bp overlap

ChIP H1 ENCFF914VQY 357 bp overlap

ChIP WA01 ENCSR000EUP.MAX.WA01 198 bp overlap

MITF 5 datasets

ChIP 501-mel GSE137522.MITF.501-mel 315 bp overlap

ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 324 bp overlap

ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 314 bp overlap

ChIP K-562 ENCSR797SWM.MITF.K-562 324 bp overlap

ChIP K562 ENCFF731XJJ 202 bp overlap

NANOG 4 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 404 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 117 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 369 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 266 bp overlap

NFYB 2 datasets

Motif DE_12h DE_12h-NFYB_MA0502.3 9 bp overlap

ChIP K-562 ENCSR000EGQ.NFYB.K-562 217 bp overlap

POU2F1::SOX2 1 dataset

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

POU4F2 1 dataset

Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap

POU5F1 1 dataset

ChIP DE_D1 DED1-OCT4_Batch_II 261 bp overlap

PRDM10 2 datasets

ChIP K-562 ENCSR120MPG.PRDM10.K-562 350 bp overlap

ChIP K562 ENCFF740YLK 228 bp overlap

Pou5f1::Sox2 1 dataset

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

Prdm5 1 dataset

Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap

RAD51 3 datasets

ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 248 bp overlap

ChIP K-562 ENCSR524BUE.RAD51.K-562 266 bp overlap

ChIP K562 ENCFF133ELP 204 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 266 bp overlap

SMAD2_3 1 dataset

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 284 bp overlap

SMARCA4 2 datasets

ChIP hiPSC GSE124903.SMARCA4.hiPSC 230 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 262 bp overlap

SMARCB1 1 dataset

ChIP hiPSC GSE124903.SMARCB1.hiPSC 264 bp overlap

SMARCC1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 355 bp overlap

SOX10 1 dataset

Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap

SOX4 1 dataset

Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap

SP1 1 dataset

ChIP WA01 ENCSR000BIR.SP1.WA01 173 bp overlap

SP3 1 dataset

Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap

SP4 1 dataset

Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap

SP8 1 dataset

Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap

SPIB 2 datasets

Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap

Motif DE_24h DE_24h-SPIB_MA0081.3 13 bp overlap

Sox17 1 dataset

Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap

Sox5 1 dataset

Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap

Sox7 1 dataset

Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap

Spi1 2 datasets

Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap

Motif DE_24h DE_24h-Spi1_MA0080.7 13 bp overlap

TBR1 1 dataset

Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap

TBX1 1 dataset

Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap

TBX18 1 dataset

Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap

TBX2 1 dataset

Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap

TBX20 1 dataset

Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap

TBX21 1 dataset

Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap

TBX3 1 dataset

Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap

THAP1 1 dataset

Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap

Tbx6 1 dataset

Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap

USF1 7 datasets

ChIP H1 ENCFF090WVU 93 bp overlap

ChIP Ishikawa ENCSR000BSX.USF1.Ishikawa 171 bp overlap

ChIP K-562 ENCSR000BKT.USF1.K-562 280 bp overlap

ChIP K562 ENCFF633EZB 265 bp overlap

ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 169 bp overlap

ChIP SK-N-SH ENCSR000BTZ.USF1.SK-N-SH 145 bp overlap

ChIP WA01 ENCSR000BIU.USF1.WA01 295 bp overlap

USF2 9 datasets

ChIP A-549 ENCSR563FBT.USF2.A-549 226 bp overlap

ChIP GM12878 GSE97661.USF2.GM12878 273 bp overlap

ChIP H1 ENCFF434EDF 277 bp overlap

ChIP Hep-G2 GSE97661.USF2.Hep-G2 136 bp overlap

ChIP K-562 ENCSR359NFW.USF2.K-562 244 bp overlap

ChIP K-562 ENCSR578KEN.USF2.K-562 250 bp overlap

ChIP K562 ENCFF306QPU 366 bp overlap

ChIP K562 ENCFF397QGU 265 bp overlap

ChIP WTC11 ENCFF139JAW 391 bp overlap

ZNF213 1 dataset

Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap

ZNF331 1 dataset

Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap

ZNF460 1 dataset

Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap

ZNF692 1 dataset

Motif DE_12h DE_12h-ZNF692_MA1986.2 8 bp overlap

ZNF75A 1 dataset

Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap