chr12 : 53,234,337 53,234,727
390 bp 47 TFs 2 linked genes
This 390 bp open chromatin element is linked to RARG and ENSG00000283536 and is bound by 47 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
RARG 2.1 kb Proximal Proximity
ENSG00000283536 7.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:53,229,337 – 53,239,727
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
47 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 390 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 127 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 73 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 186 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 363 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 50 bp overlap
BRD4 7 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 156 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 129 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 83 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 313 bp overlap
ChIP hESC GSE33281.BRD4.hESC 74 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 173 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 126 bp overlap
CTCF 1 dataset
ChIP colon_transverse ENCSR236YGF.CTCF.colon_transverse 247 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 59 bp overlap
DPF2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 348 bp overlap
EGR1 2 datasets
ChIP K-562 ENCSR000BNE.EGR1.K-562 147 bp overlap
ChIP K562 ENCFF006PJY 245 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 88 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 140 bp overlap
EZH2 2 datasets
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 356 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 292 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 174 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 121 bp overlap
KLF1 1 dataset
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 350 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 390 bp overlap
KLF5 1 dataset
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 310 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 165 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 220 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 67 bp overlap
MAZ 4 datasets
ChIP HEK293 ENCFF994GSG 351 bp overlap
ChIP HEK293 ENCFF994GSG 154 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 390 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 262 bp overlap
MYNN 1 dataset
ChIP Hep-G2 ENCSR398TMP.MYNN.Hep-G2 127 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 229 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 115 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCFF016MNJ 367 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 346 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 291 bp overlap
PDX1 1 dataset
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 169 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 89 bp overlap
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 81 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 61 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 150 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 163 bp overlap
SMARCA4 4 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 172 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 383 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 384 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 61 bp overlap
SMARCC1 3 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 300 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 208 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 388 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 115 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 111 bp overlap
SP1 1 dataset
ChIP HEK293T ERP007114.SP1.HEK293T 262 bp overlap
SP2 4 datasets
ChIP HEK293 ENCFF181QXT 282 bp overlap
ChIP HEK293 ENCSR807LQP.SP2.HEK293 314 bp overlap
ChIP HEK293 GSE76494.SP2.HEK293 238 bp overlap
ChIP HEK293T ERP007114.SP2.HEK293T 230 bp overlap
SP3 2 datasets
ChIP HEK293 ENCFF087XLA 302 bp overlap
ChIP HEK293 ENCSR141PZA.SP3.HEK293 352 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 289 bp overlap
SS18 1 dataset
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 237 bp overlap
TAF1 2 datasets
ChIP WA01 ENCSR000BHO.TAF1.WA01 72 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 158 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 67 bp overlap
ZBTB7A 2 datasets
ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 167 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 139 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 56 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 187 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 116 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 87 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 304 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 229 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 213 bp overlap