chr12 : 21,417,897 – 21,418,737

840 bp 68 TFs 0 linked genes

This 840 bp open chromatin element has no linked target genes and is bound by 68 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

68 transcription factors

ASCL1 1 dataset

Motif DE_60h DE_60h-ASCL1_MA1631.2 9 bp overlap

BRD3 1 dataset

ChIP K-562_DMSO GSE120715.BRD3.K-562_DMSO 143 bp overlap

BRD4 3 datasets

ChIP K-562_DMSO GSE99178.BRD4.K-562_DMSO 60 bp overlap

ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 391 bp overlap

ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 391 bp overlap

CHD2 1 dataset

ChIP K562 ENCFF857WME 273 bp overlap

CHD8 1 dataset

ChIP T-47D_R5020_45 GSE62428.CHD8.T-47D_R5020_45 159 bp overlap

Dmbx1 1 dataset

Motif DE_60h DE_60h-Dmbx1_MA0883.2 10 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 213 bp overlap

ESR1 1 dataset

ChIP T-47D ENCSR000BQD.ESR1.T-47D 186 bp overlap

FIGLA 1 dataset

Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap

FOXA1 1 dataset

ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 166 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 840 bp overlap

ChIP DE DE-FOXA2-2 615 bp overlap

FOXB1 2 datasets

Motif DE_48h DE_48h-FOXB1_MA0845.1 11 bp overlap

Motif DE_60h DE_60h-FOXB1_MA0845.1 11 bp overlap

GATA4 3 datasets

ChIP DE DE-GATA4-1 701 bp overlap

ChIP DE DE-GATA4-2 715 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 368 bp overlap

GATA6 3 datasets

ChIP DE DE-GATA6-1 621 bp overlap

ChIP DE DE-GATA6-2 729 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 462 bp overlap

GATAD2B 1 dataset

ChIP K-562 ENCSR547LKC.GATAD2B.K-562 209 bp overlap

HOXA3 2 datasets

Motif DE_48h DE_48h-HOXA3_MA2119.1 7 bp overlap

Motif DE_60h DE_60h-HOXA3_MA2119.1 7 bp overlap

HOXA4 2 datasets

Motif DE_48h DE_48h-HOXA4_MA1496.2 7 bp overlap

Motif DE_60h DE_60h-HOXA4_MA1496.2 7 bp overlap

HOXB4 2 datasets

Motif DE_48h DE_48h-HOXB4_MA1499.2 6 bp overlap

Motif DE_60h DE_60h-HOXB4_MA1499.2 6 bp overlap

HOXC4 2 datasets

Motif DE_48h DE_48h-HOXC4_MA1504.2 6 bp overlap

Motif DE_60h DE_60h-HOXC4_MA1504.2 6 bp overlap

HOXD4 2 datasets

Motif DE_48h DE_48h-HOXD4_MA1507.2 6 bp overlap

Motif DE_60h DE_60h-HOXD4_MA1507.2 6 bp overlap

Irf1 2 datasets

Motif DE_48h DE_48h-Irf1_MA0050.4 11 bp overlap

Motif DE_60h DE_60h-Irf1_MA0050.4 11 bp overlap

JUN 1 dataset

ChIP DE_D2 S02-DE-d2-JUN-exp1 284 bp overlap

L3MBTL2 2 datasets

ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 354 bp overlap

ChIP K562 ENCFF320EQC 549 bp overlap

Lhx3 2 datasets

Motif DE_48h DE_48h-Lhx3_MA0135.2 12 bp overlap

Motif DE_60h DE_60h-Lhx3_MA0135.2 12 bp overlap

MED1 1 dataset

ChIP VCaP_DHTTHZ1 GSE125245.MED1.VCaP_DHTTHZ1 159 bp overlap

MEIS1 2 datasets

Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap

Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap

MGA 2 datasets

Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap

ChIP K-562 ENCSR710WLO.MGA.K-562 324 bp overlap

NBN 1 dataset

ChIP K-562 ENCSR085QEV.NBN.K-562 385 bp overlap

NKX6-3 2 datasets

Motif DE_48h DE_48h-NKX6-3_MA1530.2 8 bp overlap

Motif DE_60h DE_60h-NKX6-3_MA1530.2 8 bp overlap

NR1I3 2 datasets

Motif DE_48h DE_48h-NR1I3_MA1534.2 8 bp overlap

Motif DE_60h DE_60h-NR1I3_MA1534.2 8 bp overlap

NR3C1 1 dataset

ChIP A-549 ENCSR000BHG.NR3C1.A-549 120 bp overlap

PHOX2B 1 dataset

Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap

POLR2A 1 dataset

ChIP K562 ENCFF215CWW 643 bp overlap

Ptf1A 1 dataset

Motif DE_60h DE_60h-Ptf1A_MA1620.2 8 bp overlap

RBFOX2 4 datasets

ChIP K-562 GSE120104.RBFOX2.K-562 380 bp overlap

ChIP K-562 ENCSR822LBD.RBFOX2.K-562 205 bp overlap

ChIP K-562 ENCSR822LBD.RBFOX2.K-562 110 bp overlap

ChIP K-562 GSE120104.RBFOX2.K-562 110 bp overlap

RELA 1 dataset

ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 109 bp overlap

RUNX3 1 dataset

Motif DE_60h DE_60h-RUNX3_MA0684.3 8 bp overlap

SIX1 1 dataset

Motif DE_60h DE_60h-SIX1_MA1118.2 9 bp overlap

SIX2 1 dataset

Motif DE_60h DE_60h-SIX2_MA1119.2 11 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 441 bp overlap

SMAD2_3 1 dataset

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 464 bp overlap

SNAI1 1 dataset

Motif DE_60h DE_60h-SNAI1_MA1558.2 7 bp overlap

SNAI3 1 dataset

Motif DE_60h DE_60h-SNAI3_MA1559.2 9 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 376 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 499 bp overlap

SOX6 2 datasets

ChIP K-562 ENCSR788RSW.SOX6.K-562 302 bp overlap

ChIP K562 ENCFF059YCJ 437 bp overlap

Stat2 1 dataset

Motif DE_60h DE_60h-Stat2_MA1623.2 10 bp overlap

Stat6 1 dataset

Motif DE_60h DE_60h-Stat6_MA0520.2 10 bp overlap

TBX1 1 dataset

Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap

TBX15 1 dataset

Motif DE_60h DE_60h-TBX15_MA0803.1 8 bp overlap

TBX2 1 dataset

Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap

TBX4 1 dataset

Motif DE_60h DE_60h-TBX4_MA0806.1 8 bp overlap

TBX5 1 dataset

Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap

TCF12 1 dataset

Motif DE_60h DE_60h-TCF12_MA1648.2 7 bp overlap

TCF3 1 dataset

Motif DE_60h DE_60h-TCF3_MA0522.4 7 bp overlap

TCF4 1 dataset

Motif DE_60h DE_60h-TCF4_MA0830.3 8 bp overlap

TFAP2A 1 dataset

Motif DE_60h DE_60h-TFAP2A_MA0003.5 9 bp overlap

TFAP2C 1 dataset

Motif DE_60h DE_60h-TFAP2C_MA0814.3 9 bp overlap

ZBTB40 1 dataset

ChIP K-562 ENCSR237VLT.ZBTB40.K-562 293 bp overlap

ZEB1 1 dataset

Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap

ZEB2 1 dataset

ChIP K-562 ENCSR322CFO.ZEB2.K-562 440 bp overlap

ZIM3 1 dataset

Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap

ZKSCAN2 1 dataset

ChIP HEK293T GSE78099.ZKSCAN2.HEK293T 324 bp overlap

ZNF592 1 dataset

ChIP K-562 ENCSR249BHQ.ZNF592.K-562 535 bp overlap

ZNF708 1 dataset

Motif DE_60h DE_60h-ZNF708_MA1730.2 9 bp overlap

ZNF75A 2 datasets

Motif DE_48h DE_48h-ZNF75A_MA2097.1 12 bp overlap

Motif DE_60h DE_60h-ZNF75A_MA2097.1 12 bp overlap

ZNF766 1 dataset

Motif DE_60h DE_60h-ZNF766_MA2098.1 9 bp overlap

Zfp335 1 dataset

Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap