chr1 : 200,493,336 – 200,493,733
397 bp 56 TFs 1 linked gene
This 397 bp open chromatin element is linked to ENSG00000282849 and is bound by 56 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000282849 9.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:200,488,336 – 200,498,733
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
56 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 238 bp overlap
ARNT 1 dataset
ChIP RCC4 GSE85352.ARNT.RCC4 238 bp overlap
ASCL1 2 datasets
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 116 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 109 bp overlap
BRD4 3 datasets
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.BRD4.Hs-352-Sk_PAX3-FOXO1-vector 235 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 275 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 235 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_Trametinib GSE126143.CASZ1.rhabdomyosarcoma_Trametinib 397 bp overlap
CHD4 2 datasets
ChIP RH5 GSE155861.CHD4.RH5 223 bp overlap
ChIP SCMC GSE155861.CHD4.SCMC 387 bp overlap
CTCF 1 dataset
ChIP RH4 GSE83726.CTCF.RH4 243 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 251 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 319 bp overlap
ChIP neural cell ENCFF442QNK 154 bp overlap
EPAS1 1 dataset
ChIP 786-O GSE34871.EPAS1.786-O 219 bp overlap
ESR1 1 dataset
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 223 bp overlap
ETS1 1 dataset
ChIP 786-O GSE86092.ETS1.786-O 194 bp overlap
FOXA2 4 datasets
ChIP DE DE-FOXA2-2 245 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 105 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 277 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 272 bp overlap
FOXO1-PAX3 1 dataset
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 222 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 259 bp overlap
ChIP DE DE-GATA4-2 273 bp overlap
ChIP foregut GSE117136.GATA4.foregut 292 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 397 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 390 bp overlap
GATA6 8 datasets
ChIP AGS GSE51936.GATA6.AGS 53 bp overlap
ChIP DE DE-GATA6-1 279 bp overlap
ChIP DE DE-GATA6-2 246 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 263 bp overlap
ChIP foregut GSE117136.GATA6.foregut 366 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 397 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 337 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 293 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 343 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 374 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 313 bp overlap
HIF1A 1 dataset
ChIP 786-O GSE34871.HIF1A.786-O 156 bp overlap
HNF1B 2 datasets
ChIP PANC-1_HNF1B-OE GSE119930.HNF1B.PANC-1_HNF1B-OE 397 bp overlap
ChIP foregut GSE117136.HNF1B.foregut 354 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 314 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 265 bp overlap
KMT2A 1 dataset
ChIP blood_cord GSE83671.KMT2A.blood_cord 160 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 397 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 322 bp overlap
MYF5 1 dataset
ChIP Rh18 GSE84628.MYF5.Rh18 332 bp overlap
MYOD1 5 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 317 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 368 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 193 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 216 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 109 bp overlap
MYOG 3 datasets
ChIP RH4 GSE83726.MYOG.RH4 367 bp overlap
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 344 bp overlap
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 242 bp overlap
NEUROG2 5 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 291 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 262 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 277 bp overlap
ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 238 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 312 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 186 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 278 bp overlap
OSR2 4 datasets
ChIP HEK293 ENCFF875BDB 243 bp overlap
ChIP HEK293 ENCFF875BDB 135 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 336 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 227 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 198 bp overlap
PDX1 5 datasets
ChIP hESC GSE58685.PDX1.hESC 226 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 353 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 397 bp overlap
ChIP islet ERP001456.PDX1.islet 168 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 397 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 336 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 219 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 293 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 238 bp overlap
RAD21 2 datasets
ChIP RH4 GSE83726.RAD21.RH4 168 bp overlap
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 397 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 265 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 367 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 397 bp overlap
RELA 1 dataset
ChIP 786-O GSE86092.RELA.786-O 213 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 336 bp overlap
ChIP neural cell ENCFF882LXX 384 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 248 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 277 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 249 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 370 bp overlap
SMARCC1 1 dataset
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 397 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 334 bp overlap
SOX8 2 datasets
ChIP RH4 GSE116344.SOX8.RH4 262 bp overlap
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 241 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 190 bp overlap
TEAD1 1 dataset
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 190 bp overlap
YY1 2 datasets
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 306 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 173 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 224 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 218 bp overlap
ZFP57 1 dataset
ChIP hESC GSE115387.ZFP57.hESC 150 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 120 bp overlap
ZNF264 1 dataset
ChIP HEK293 GSE76494.ZNF264.HEK293 151 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 55 bp overlap
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