chr11 : 41,459,886 41,460,241
355 bp 38 TFs 1 linked gene
This 355 bp open chromatin element is linked to LRRC4C and is bound by 38 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LRRC4C 250 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:41,454,886 – 41,465,241
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
38 transcription factors
Source
Cell type
AR 6 datasets
ChIP LAPC-4_R1881 GSE148358.AR.LAPC-4_R1881 165 bp overlap
ChIP MCF-7 GSE48930.AR.MCF-7 152 bp overlap
ChIP VCaP GSE148358.AR.VCaP 141 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 309 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 355 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 322 bp overlap
ARID2 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 68 bp overlap
ASH2L 2 datasets
ChIP VCaP GSE60841.ASH2L.VCaP 87 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 355 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 350 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 95 bp overlap
BCOR 1 dataset
ChIP VCaP_EtOH GSE122572.BCOR.VCaP_EtOH 54 bp overlap
BMI1 1 dataset
ChIP GM12878 ENCSR469WII.BMI1.GM12878 247 bp overlap
BRD4 8 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 208 bp overlap
ChIP VCaP GSE148358.BRD4.VCaP 280 bp overlap
ChIP VCaP_Darolutamide GSE148358.BRD4.VCaP_Darolutamide 174 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 61 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 275 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 287 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 355 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 155 bp overlap
CTCF 3 datasets
ChIP GSC23 GSE139416.CTCF.GSC23 137 bp overlap
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 284 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 303 bp overlap
EP300 1 dataset
ChIP neural ENCSR843ZUP.EP300.neural 345 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 53 bp overlap
ESR1 2 datasets
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 253 bp overlap
ChIP breast_tumor_BADOUTCOME GSE40867.ESR1.breast_tumor_BADOUTCOME 319 bp overlap
EZH2 5 datasets
ChIP SF8628 GSE94834.EZH2.SF8628 195 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 267 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 103 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 96 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 355 bp overlap
FOXA1 1 dataset
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 189 bp overlap
GATA2 1 dataset
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 322 bp overlap
GATA6 1 dataset
ChIP PATU8988 GSE47535.GATA6.PATU8988 198 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 355 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 178 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 73 bp overlap
MED1 1 dataset
ChIP VCaP GSE148358.MED1.VCaP 115 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCFF746HVJ 229 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 355 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 171 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 176 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 355 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 249 bp overlap
POU2F2 1 dataset
ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 196 bp overlap
RAD21 1 dataset
ChIP neural ENCSR198ZYJ.RAD21.neural 333 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 171 bp overlap
RNF2 1 dataset
ChIP fibroblast GSE139053.RNF2.fibroblast 65 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 219 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 164 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 214 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 355 bp overlap
STAT1 1 dataset
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 85 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 233 bp overlap