chr11 : 27,635,718 – 27,636,112
394 bp 59 TFs 1 linked gene
This 394 bp open chromatin element is linked to LINC00678 and is bound by 59 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC00678 1.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:27,630,718 – 27,641,112
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 61 bp overlap
BCL6B 1 dataset
Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap
BRD4 2 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 198 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 60 bp overlap
CHD1 2 datasets
ChIP H1 ENCFF998XEK 152 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 100 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 299 bp overlap
Dux 1 dataset
Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
GATA1 3 datasets
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 261 bp overlap
ChIP erythroid_Don002 GSE137982.GATA1.erythroid_Don002 221 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 335 bp overlap
GATA2 1 dataset
Motif DE_12h DE_12h-GATA2_MA0036.4 7 bp overlap
GATA4 1 dataset
Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap
GATA5 1 dataset
Motif DE_12h DE_12h-GATA5_MA0766.3 8 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 256 bp overlap
ChIP DE DE-GATA6-2 327 bp overlap
Motif DE_12h DE_12h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 236 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 232 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 233 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 237 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 221 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 253 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 279 bp overlap
GRHL1 1 dataset
Motif DE_12h DE_12h-GRHL1_MA0647.2 10 bp overlap
GRHL2 1 dataset
ChIP HBE GSE46194.GRHL2.HBE 135 bp overlap
Gata3 1 dataset
Motif DE_12h DE_12h-Gata3_MA0037.5 8 bp overlap
Hmga1 1 dataset
Motif DE_12h DE_12h-Hmga1_MA2124.1 8 bp overlap
IRF2 1 dataset
Motif DE_12h DE_12h-IRF2_MA0051.2 16 bp overlap
IRF3 1 dataset
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
IRF7 1 dataset
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 327 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 170 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 141 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 131 bp overlap
POLR2A 6 datasets
ChIP GM12891 ENCFF012SUT 221 bp overlap
ChIP GM23338 ENCFF450WCS 88 bp overlap
ChIP H1 ENCFF566JSR 201 bp overlap
ChIP H1 ENCFF770YBQ 198 bp overlap
ChIP H1 ENCFF833NJP 71 bp overlap
ChIP Raji ENCFF613VGX 120 bp overlap
POU5F1 2 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 125 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 231 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 52 bp overlap
RELA 1 dataset
ChIP HDF_NUTLIN GSE77225.RELA.HDF_NUTLIN 331 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 187 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 84 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 213 bp overlap
SPIC 1 dataset
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
STAT1::STAT2 1 dataset
Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
TAF1 3 datasets
ChIP H1 ENCFF478SZO 252 bp overlap
ChIP H1 ENCFF478SZO 394 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 353 bp overlap
TAL1 2 datasets
ChIP ProEs GSE59087.TAL1.ProEs 296 bp overlap
ChIP erythroid GSE42390.TAL1.erythroid 135 bp overlap
TBP 11 datasets
ChIP H1 ENCFF859IIO 227 bp overlap
ChIP HeLa-S3 ENCSR000EDD.TBP.HeLa-S3 88 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 158 bp overlap
ChIP hESC GSE122298.TBP.hESC 362 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 185 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 105 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 394 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 186 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 116 bp overlap
ChIP hiPSC_WTa_RNase-pos GSE128135.TBP.hiPSC_WTa_RNase-pos 143 bp overlap
ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 154 bp overlap
TCF12 1 dataset
ChIP H1 ENCFF203EBH 251 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 1 dataset
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
TFCP2 1 dataset
Motif DE_12h DE_12h-TFCP2_MA1968.2 9 bp overlap
TP53 26 datasets
ChIP GM00011 GSE55727.TP53.GM00011 394 bp overlap
ChIP GM06170 GSE55727.TP53.GM06170 394 bp overlap
ChIP MCF-7_1h_IR_10Gy GSE100099.TP53.MCF-7_1h_IR_10Gy 303 bp overlap
ChIP MCF-7_2-5h_IR_10Gy GSE100099.TP53.MCF-7_2-5h_IR_10Gy 293 bp overlap
ChIP MCF-7_4h_IR_10Gy GSE100099.TP53.MCF-7_4h_IR_10Gy 299 bp overlap
ChIP MCF-7_7-5h_IR_10Gy GSE100099.TP53.MCF-7_7-5h_IR_10Gy 394 bp overlap
ChIP MCF-7_7-5h_IR_10Gy_Nutlin GSE100099.TP53.MCF-7_7-5h_IR_10Gy_Nutlin 394 bp overlap
ChIP MCF-7_NCS-treated GSE101737.TP53.MCF-7_NCS-treated 210 bp overlap
ChIP MCF-7_nutlin GSE86164.TP53.MCF-7_nutlin 394 bp overlap
ChIP MOLM-13_DMSO GSE131484.TP53.MOLM-13_DMSO 332 bp overlap
ChIP MOLM-13_Daunorubicin GSE131484.TP53.MOLM-13_Daunorubicin 351 bp overlap
ChIP MOLM-13_R282W_DMSO GSE131484.TP53.MOLM-13_R282W_DMSO 394 bp overlap
ChIP MOLM-13_R282W_Daunorubicin GSE131484.TP53.MOLM-13_R282W_Daunorubicin 330 bp overlap
ChIP SJSA-1 GSE86164.TP53.SJSA-1 194 bp overlap
ChIP SJSA-1_nutlin GSE86164.TP53.SJSA-1_nutlin 394 bp overlap
ChIP SaOS-2 GSE15780.TP53.SaOS-2 394 bp overlap
ChIP WTC11 ENCFF359JCU 212 bp overlap
ChIP WTC11 ENCFF359JCU 277 bp overlap
ChIP keratinocyte GSE56674.TP53.keratinocyte 394 bp overlap
ChIP keratinocyte_ADRIA GSE56674.TP53.keratinocyte_ADRIA 393 bp overlap
ChIP keratinocyte_CISP GSE56674.TP53.keratinocyte_CISP 394 bp overlap
ChIP lymphocyte_116 GSE110368.TP53.lymphocyte_116 353 bp overlap
ChIP lymphocyte_116_DXR GSE110368.TP53.lymphocyte_116_DXR 365 bp overlap
ChIP lymphocyte_116_Nutlin GSE110368.TP53.lymphocyte_116_Nutlin 394 bp overlap
ChIP lymphocyte_45_DXR GSE110368.TP53.lymphocyte_45_DXR 330 bp overlap
ChIP lymphocyte_45_Nutlin GSE110368.TP53.lymphocyte_45_Nutlin 299 bp overlap
TP63 8 datasets
ChIP keratinocyte GSE56674.TP63.keratinocyte 348 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 228 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 333 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 332 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 347 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 346 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 375 bp overlap
ChIP keratinocyte_epidermal_KDPAF GSE67382.TP63.keratinocyte_epidermal_KDPAF 233 bp overlap
TP73_DELTANP 1 dataset
ChIP SaOS-2 GSE15780.TP73_DELTANP.SaOS-2 271 bp overlap
TRIM28 2 datasets
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 79 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 140 bp overlap
TRPS1 1 dataset
Motif DE_12h DE_12h-TRPS1_MA1970.2 8 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 184 bp overlap
ZBTB24 1 dataset
Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 226 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF341 1 dataset
Motif DE_12h DE_12h-ZNF341_MA1655.2 8 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
ZNF692 1 dataset
Motif DE_12h DE_12h-ZNF692_MA1986.2 8 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 266 bp overlap
ZNF766 1 dataset
Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
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