chr1 : 197,438,302 – 197,438,444
142 bp 43 TFs 1 linked gene
This 142 bp open chromatin element is linked to CRB1 and is bound by 43 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CRB1 3.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:197,433,302 – 197,443,444
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
43 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP NGP GSE134626.ARID1A.NGP 109 bp overlap
BRD4 4 datasets
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 142 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 113 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 124 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 137 bp overlap
CEBPG 1 dataset
ChIP K-562 ENCSR490LWA.CEBPG.K-562 117 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 141 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 71 bp overlap
FOSL1 1 dataset
ChIP BT-549 GSE46166.FOSL1.BT-549 142 bp overlap
GATA1 3 datasets
ChIP erythroblast ENCFF867JAR 142 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 142 bp overlap
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 142 bp overlap
GATA2 6 datasets
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 78 bp overlap
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 62 bp overlap
ChIP SH-SY5Y ENCFF485YIB 142 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 142 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 142 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 142 bp overlap
GATA3 14 datasets
ChIP BE2C GSE65664.GATA3.BE2C 142 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 142 bp overlap
ChIP Jurkat GSE120063.GATA3.Jurkat 134 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 142 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 142 bp overlap
ChIP SH-SY5Y ENCFF475HYF 105 bp overlap
ChIP SH-SY5Y ENCFF475HYF 142 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 142 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 142 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 142 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 98 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 142 bp overlap
ChIP T-47D_sc GSE122847.GATA3.T-47D_sc 131 bp overlap
ChIP T47D-A1-2_EtOH GSE112491.GATA3.T47D-A1-2_EtOH 94 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 142 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 95 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 142 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 142 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 142 bp overlap
HOXB13 1 dataset
Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap
ISL1 3 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 142 bp overlap
ChIP SK-N-SH ENCFF285GEQ 142 bp overlap
ChIP SK-N-SH ENCFF285GEQ 126 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 142 bp overlap
KDM1A_8A 1 dataset
ChIP SH-SY5Y_B3_SHCTR GSE58258.KDM1A_8A.SH-SY5Y_B3_SHCTR 81 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 65 bp overlap
MAML3 2 datasets
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 142 bp overlap
ChIP SK-N-SH_RA GSE69119.MAML3.SK-N-SH_RA 142 bp overlap
MAX 1 dataset
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 118 bp overlap
MYC 2 datasets
ChIP NB69 GSE138295.MYC.NB69 142 bp overlap
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 142 bp overlap
MYCN 11 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 132 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 142 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 142 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 62 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 142 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 142 bp overlap
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 142 bp overlap
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 119 bp overlap
ChIP SHEP-21N_24h GSE80151.MYCN.SHEP-21N_24h 142 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.MYCN.SHEP-21N_DOX_0H 118 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 101 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 142 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 142 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 142 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 142 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 127 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 106 bp overlap
POLR2A 1 dataset
ChIP SK-N-MC ENCFF088IVG 142 bp overlap
POU6F1 2 datasets
ChIP SK-N-SH ENCFF834EMP 91 bp overlap
ChIP SK-N-SH ENCFF834EMP 142 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 142 bp overlap
RARB 1 dataset
ChIP SK-N-SH ENCFF475WOR 127 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 142 bp overlap
SMARCA4 4 datasets
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 142 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 142 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 142 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 142 bp overlap
SMARCB1 2 datasets
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCB1.TTC-1240_SMARCB1-FL 106 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCB1.TTC-1240_delC 142 bp overlap
SMARCC1 3 datasets
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 142 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCC1.TTC-1240_SMARCB1-FL 142 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 142 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 142 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 142 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 142 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 142 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 142 bp overlap
TOX 1 dataset
ChIP SK-N-SH ENCFF977TQV 111 bp overlap
TWIST1 7 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 142 bp overlap
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 142 bp overlap
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 142 bp overlap
ChIP SHEP-21N_24h GSE80151.TWIST1.SHEP-21N_24h 142 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 142 bp overlap
ChIP SHEP-21N_DOX_24H GSE80151.TWIST1.SHEP-21N_DOX_24H 112 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 142 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 142 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 58 bp overlap
ZC3H10 1 dataset
ChIP SK-N-SH ENCFF465WAR 112 bp overlap
ZNF608 2 datasets
ChIP SK-N-SH ENCFF518LYG 142 bp overlap
ChIP SK-N-SH ENCFF518LYG 68 bp overlap
Zic1::Zic2 1 dataset
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
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