chr11 : 2,882,619 2,883,133
514 bp 54 TFs 1 linked gene
This 514 bp open chromatin element is linked to CDKN1C and is bound by 54 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CDKN1C 2.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:2,877,619 – 2,888,133
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 196 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 336 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 201 bp overlap
BRD3 1 dataset
ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 152 bp overlap
BRD4 4 datasets
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 283 bp overlap
ChIP SUM159PT_100nMtrametinib300nMJQ1_24h GSE87418.BRD4.SUM159PT_100nMtrametinib300nMJQ1_24h 514 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 261 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 362 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 250 bp overlap
ChIP K562 ENCFF673OEZ 310 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 54 bp overlap
CTCF 19 datasets
ChIP H1 ENCFF764RHO 240 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 237 bp overlap
ChIP HCT116 ENCFF003KHP 421 bp overlap
ChIP HCT116 ENCFF003KHP 265 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 126 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 382 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 249 bp overlap
ChIP HeLa-S3 ENCSR000DLO.CTCF.HeLa-S3 88 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 459 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 296 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 221 bp overlap
ChIP adrenal-gland ENCSR770IWO.CTCF.adrenal-gland 330 bp overlap
ChIP esophagus_muscularis-mucosa ENCSR559KAB.CTCF.esophagus_muscularis-mucosa 218 bp overlap
ChIP gastroesophageal sphincter ENCFF607YRA 394 bp overlap
ChIP gastroesophageal sphincter ENCFF607YRA 191 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 174 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 364 bp overlap
ChIP neural progenitor cell ENCFF420RBO 360 bp overlap
ChIP prostate_gland ENCSR720USO.CTCF.prostate_gland 205 bp overlap
CTCF_s 1 dataset
ChIP HeLa-S3_biotin GSE108869.CTCF_s.HeLa-S3_biotin 426 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 115 bp overlap
ESR1 1 dataset
ChIP MCF-7_LTED_E2 GSE86538.ESR1.MCF-7_LTED_E2 112 bp overlap
EZH2 7 datasets
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 117 bp overlap
ChIP SU-DHL-6_DMSO GSE134136.EZH2.SU-DHL-6_DMSO 228 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 368 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 86 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 116 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 305 bp overlap
ChIP neural progenitor cell ENCFF472NFV 329 bp overlap
GATA1 2 datasets
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 180 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 232 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 260 bp overlap
ChIP foregut GSE117136.GATA4.foregut 376 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 360 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 281 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 312 bp overlap
ChIP DE DE-GATA6-2 267 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 260 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 201 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 249 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 315 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 279 bp overlap
ChIP foregut GSE117136.GATA6.foregut 411 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 305 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 195 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 66 bp overlap
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 66 bp overlap
JUN 1 dataset
ChIP 786-O GSE86092.JUN.786-O 223 bp overlap
MAX 2 datasets
ChIP K562 ENCFF398VJM 458 bp overlap
ChIP K562 ENCFF398VJM 339 bp overlap
MED1 1 dataset
ChIP SUM159PT_100nMtrametinib300nMJQ1_24h GSE87418.MED1.SUM159PT_100nMtrametinib300nMJQ1_24h 309 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 361 bp overlap
NELFE 1 dataset
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 289 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 250 bp overlap
PARP1 1 dataset
ChIP MCF-10A GSE93038.PARP1.MCF-10A 259 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 240 bp overlap
POLR2A 2 datasets
ChIP body of pancreas ENCFF501FEC 504 bp overlap
ChIP body of pancreas ENCFF501FEC 404 bp overlap
POLR2G 2 datasets
ChIP K562 ENCFF047BLG 401 bp overlap
ChIP K562 ENCFF648YPL 401 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 248 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 214 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 305 bp overlap
RAD21 3 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 344 bp overlap
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 146 bp overlap
RBFOX2 2 datasets
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 313 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 300 bp overlap
RBM39 2 datasets
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 209 bp overlap
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 211 bp overlap
RELA 1 dataset
ChIP 786-O GSE86092.RELA.786-O 103 bp overlap
RNF2 1 dataset
ChIP WA01 ENCSR784VUY.RNF2.WA01 351 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 485 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 514 bp overlap
SMC3 1 dataset
ChIP HeLa-S3 ENCSR000ECS.SMC3.HeLa-S3 107 bp overlap
SPI1 1 dataset
ChIP K-562 ENCSR000BGW.SPI1.K-562 85 bp overlap
SUPT5H 1 dataset
ChIP HeLa GSE125534.SUPT5H.HeLa 125 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 111 bp overlap
TAF1 1 dataset
ChIP Hep-G2 ENCSR918OKK.TAF1.Hep-G2 54 bp overlap
TAL1 5 datasets
ChIP K-562 GSE107726.TAL1.K-562 131 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 151 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 189 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 234 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 230 bp overlap
TBP 2 datasets
ChIP H1 ENCFF859IIO 281 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 218 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 120 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 514 bp overlap
TP63 1 dataset
ChIP SUIT-2 GSE115461.TP63.SUIT-2 222 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 324 bp overlap
XRCC5 1 dataset
ChIP K-562 GSE120104.XRCC5.K-562 146 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 399 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 514 bp overlap
ZBTB7A 2 datasets
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 474 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 137 bp overlap
ZNF770 2 datasets
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 168 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 153 bp overlap