chr1 : 193,766,219 – 193,766,817
598 bp 41 TFs 0 linked genes
This 598 bp open chromatin element has no linked target genes and is bound by 41 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:193,761,219 – 193,771,817
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
41 transcription factors
Source
Cell type
BRD2 1 dataset
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 198 bp overlap
BRD4 1 dataset
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 119 bp overlap
CTCF 74 datasets
ChIP 22Rv1 ENCFF466OXN 598 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 395 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 399 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 416 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
ChIP GM23338 ENCFF531QOI 200 bp overlap
ChIP GM23338 ENCFF772DML 117 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 70 bp overlap
ChIP H9 ENCFF152GTF 268 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 262 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 251 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 303 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 257 bp overlap
ChIP HCT116 ENCFF209YMI 285 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 294 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 182 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 182 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 165 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 216 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 214 bp overlap
ChIP HeLa-S3 ENCFF565UFR 161 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 184 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 79 bp overlap
ChIP HepG2 ENCFF668CTD 145 bp overlap
ChIP Kasumi-1_ctrl GSE121280.CTCF.Kasumi-1_ctrl 119 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 137 bp overlap
ChIP MCF-7 ENCFF139NQI 277 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCFF954TUV 205 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 125 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 165 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 163 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 112 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 119 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 234 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 303 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 290 bp overlap
ChIP Panc1 ENCFF056JQX 598 bp overlap
ChIP Panc1 ENCFF056JQX 430 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 362 bp overlap
ChIP T-47D GSE120162.CTCF.T-47D 276 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 438 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 281 bp overlap
ChIP T-47D_triptolide GSE111923.CTCF.T-47D_triptolide 274 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 168 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 90 bp overlap
ChIP endodermal cell ENCFF471YCZ 258 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 573 bp overlap
ChIP epithelial_mammary ENCSR000DUS.CTCF.epithelial_mammary 162 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 257 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 152 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 183 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 156 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 172 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 221 bp overlap
ChIP hiPSC_IID12 GSE106870.CTCF.hiPSC_IID12 159 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 220 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 181 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 206 bp overlap
ChIP keratinocyte ENCFF046PBT 185 bp overlap
ChIP keratinocyte ENCFF291YDC 185 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 173 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 180 bp overlap
ChIP mammary epithelial cell ENCFF164SPU 265 bp overlap
ChIP neural progenitor cell ENCFF420RBO 411 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 155 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 479 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 246 bp overlap
E2F1 1 dataset
Motif DE_12h DE_12h-E2F1_MA0024.3 12 bp overlap
E2F2 1 dataset
Motif DE_12h DE_12h-E2F2_MA0864.3 13 bp overlap
E2F4 1 dataset
Motif DE_12h DE_12h-E2F4_MA0470.3 13 bp overlap
ELK1::SREBF2 1 dataset
Motif DE_12h DE_12h-ELK1SREBF2_MA1933.2 15 bp overlap
ERF::NHLH1 1 dataset
Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap
ESR1 3 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 233 bp overlap
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 94 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 168 bp overlap
FOXA2 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 287 bp overlap
GFI1 1 dataset
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
HSF1 2 datasets
ChIP HCT-116_A10_43 GSE152144.HSF1.HCT-116_A10_43 391 bp overlap
ChIP HCT-116_A8_43 GSE152144.HSF1.HCT-116_A8_43 498 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 257 bp overlap
PPARA::RXRA 2 datasets
Motif DE_12h DE_12h-PPARARXRA_MA1148.2 17 bp overlap
Motif ES_0h ES_0h-PPARARXRA_MA1148.2 17 bp overlap
PRDM1 2 datasets
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
Motif ES_0h ES_0h-PRDM1_MA0508.4 7 bp overlap
Pparg::Rxra 3 datasets
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
Motif ES_0h ES_0h-PpargRxra_MA0065.3 13 bp overlap
RAD21 6 datasets
ChIP A-549 ENCSR000BUC.RAD21.A-549 135 bp overlap
ChIP GP5D GSE51234.RAD21.GP5D 305 bp overlap
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 188 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 262 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 104 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 116 bp overlap
SMC1 1 dataset
ChIP HCT-116 GSE131606.SMC1.HCT-116 219 bp overlap
SMC3 1 dataset
ChIP hESC_D0 GSE116862.SMC3.hESC_D0 165 bp overlap
SOX21 1 dataset
Motif DE_12h DE_12h-SOX21_MA0866.1 15 bp overlap
STAT1 1 dataset
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
STAT3 9 datasets
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
ChIP T-47D_JC4741 GSE126004.STAT3.T-47D_JC4741 196 bp overlap
ChIP T-47D_JC4751 GSE126004.STAT3.T-47D_JC4751 212 bp overlap
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 260 bp overlap
ChIP T-47D_JC4755 GSE126004.STAT3.T-47D_JC4755 189 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 251 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 407 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 434 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 367 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
TEAD1 1 dataset
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
TEAD2 1 dataset
Motif DE_12h DE_12h-TEAD2_MA1121.2 7 bp overlap
TEAD3 1 dataset
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
TEAD4 2 datasets
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
TP53 1 dataset
Motif DE_12h DE_12h-TP53_MA0106.3 18 bp overlap
ZBTB26 1 dataset
Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap
ZNF317 1 dataset
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ZNF417 1 dataset
Motif DE_12h DE_12h-ZNF417_MA1727.2 7 bp overlap
ZNF530 2 datasets
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
Motif ES_0h ES_0h-ZNF530_MA1981.2 14 bp overlap
ZNF582 1 dataset
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 181 bp overlap
ZNF770 1 dataset
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
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