chr1 : 193,697,176 – 193,697,427

251 bp 59 TFs 0 linked genes

This 251 bp open chromatin element has no linked target genes and is bound by 59 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

59 transcription factors

AR 1 dataset

ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 159 bp overlap

ARID1A 2 datasets

ChIP RMG-I GSE104545.ARID1A.RMG-I 240 bp overlap

ChIP RMG-I GSE120058.ARID1A.RMG-I 244 bp overlap

BRD4 1 dataset

ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 251 bp overlap

CDK6 1 dataset

ChIP KB_IL GSE52469.CDK6.KB_IL 64 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF093OYK 121 bp overlap

Crx 1 dataset

Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap

DUX4 1 dataset

Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap

DUXA 1 dataset

Motif DE_12h DE_12h-DUXA_MA0884.2 13 bp overlap

EHF 1 dataset

Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap

ELF1 1 dataset

Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap

ELF3 1 dataset

Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap

ERF::FOXO1 1 dataset

Motif DE_12h DE_12h-ERFFOXO1_MA1936.2 12 bp overlap

ESR1 1 dataset

ChIP MCF-7_SHFOXA1_E2 ERP000380.ESR1.MCF-7_SHFOXA1_E2 131 bp overlap

ETS1 3 datasets

ChIP HUVEC-C_12h GSE93030.ETS1.HUVEC-C_12h 251 bp overlap

ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 251 bp overlap

ChIP HUVEC-C_VEGF_12h GSE109625.ETS1.HUVEC-C_VEGF_12h 251 bp overlap

ETV1 1 dataset

Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap

ETV5::FOXI1 1 dataset

Motif DE_12h DE_12h-ETV5FOXI1_MA1946.2 12 bp overlap

Erg 1 dataset

Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap

FOS 1 dataset

ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 195 bp overlap

FOSL2 1 dataset

ChIP A-549 ENCSR000BQO.FOSL2.A-549 155 bp overlap

GABPA 1 dataset

Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap

GATA6 1 dataset

ChIP AGS GSE51936.GATA6.AGS 69 bp overlap

GSC 1 dataset

Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap

GSC2 1 dataset

Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap

GTF2I 1 dataset

ChIP WTC11 ENCFF255XXZ 251 bp overlap

HMGA1 2 datasets

ChIP IMR-90_RAS-induced GSE111841.HMGA1.IMR-90_RAS-induced 68 bp overlap

ChIP IMR-90_ctrl GSE111841.HMGA1.IMR-90_ctrl 51 bp overlap

HNF4A 1 dataset

ChIP liver ERP002306.HNF4A.liver 105 bp overlap

IKZF2 1 dataset

Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap

Ikzf3 1 dataset

Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap

KLF3 1 dataset

ChIP keratinocyte GSE140991.KLF3.keratinocyte 251 bp overlap

MAML1 1 dataset

ChIP SCC_4h GSE156486.MAML1.SCC_4h 216 bp overlap

MYB 1 dataset

Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap

MYOD1 1 dataset

ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 204 bp overlap

NANOG 2 datasets

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 203 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 171 bp overlap

NR2C2 1 dataset

ChIP HeLa-S3 ENCSR000EVN.NR2C2.HeLa-S3 71 bp overlap

NR3C1 4 datasets

ChIP A-549 ENCSR000BHF.NR3C1.A-549 251 bp overlap

ChIP A-549 ENCSR000BHG.NR3C1.A-549 219 bp overlap

ChIP A-549 ENCSR000BJR.NR3C1.A-549 177 bp overlap

ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 126 bp overlap

OTX1 1 dataset

Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap

PITX1 1 dataset

Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap

PITX3 1 dataset

Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap

POU5F1 1 dataset

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 157 bp overlap

RBPJ 1 dataset

ChIP SCC_4h GSE156486.RBPJ.SCC_4h 188 bp overlap

RELA 2 datasets

ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 205 bp overlap

ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 138 bp overlap

RHOXF1 1 dataset

Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap

SMARCA4 4 datasets

ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 78 bp overlap

ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 79 bp overlap

ChIP A-549_AG15723 GSE132290.SMARCA4.A-549_AG15723 108 bp overlap

ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 241 bp overlap

SOX2 1 dataset

ChIP hiPSC GSE56567.SOX2.hiPSC 223 bp overlap

SPIB 1 dataset

Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap

SUPT6H 1 dataset

ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 122 bp overlap

Sox11 1 dataset

Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap

Sox17 1 dataset

Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap

Sox6 1 dataset

Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap

Sox7 1 dataset

Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap

TCF7L2 2 datasets

ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 224 bp overlap

ChIP HCT116 ENCFF038POZ 251 bp overlap

ZNF121 1 dataset

ChIP WTC11 ENCFF291API 203 bp overlap

ZNF134 2 datasets

ChIP K-562 ENCSR553NTC.ZNF134.K-562 181 bp overlap

ChIP K562 ENCFF502NWS 223 bp overlap

ZNF143 1 dataset

ChIP WA01 ENCSR000EBW.ZNF143.WA01 108 bp overlap

ZNF175 1 dataset

Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap

ZNF189 1 dataset

Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap

ZNF675 1 dataset

Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap

ZNF692 1 dataset

Motif DE_12h DE_12h-ZNF692_MA1986.2 8 bp overlap

ZNF750 1 dataset

ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 251 bp overlap