chr9 : 105,458,358 – 105,459,172
814 bp 80 TFs 4 linked genes
This 814 bp open chromatin element is linked to 4 target genes and is bound by 80 transcription factors.
Linked Genes
4 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
FSD1L 10.6 kb Distal Multiome
FKTN 99.5 kb Distal Multiome
SLC44A1 214.0 kb Distal Multiome
TMEM38B 235.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:105,453,358 – 105,464,172
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
80 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 124 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 236 bp overlap
BRD4 1 dataset
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 137 bp overlap
CBX1 1 dataset
ChIP K-562 ENCSR948QLZ.CBX1.K-562 285 bp overlap
CBX3 1 dataset
ChIP K562 ENCFF410AQU 336 bp overlap
CBX5 3 datasets
ChIP GM12878 ENCSR372GIN.CBX5.GM12878 207 bp overlap
ChIP K-562 ENCSR272JAT.CBX5.K-562 265 bp overlap
ChIP K562 ENCFF188CYP 317 bp overlap
CC2D1A 3 datasets
ChIP K-562 ENCSR343IFJ.CC2D1A.K-562 427 bp overlap
ChIP K562 ENCFF567XUT 407 bp overlap
ChIP K562 ENCFF567XUT 445 bp overlap
CHAMP1 3 datasets
ChIP K-562 ENCSR315NNL.CHAMP1.K-562 407 bp overlap
ChIP K-562 ENCSR065XVO.CHAMP1.K-562 305 bp overlap
ChIP K562 ENCFF860ZIW 365 bp overlap
CHD2 1 dataset
ChIP WA01 ENCSR000EBT.CHD2.WA01 143 bp overlap
CTCF 8 datasets
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif DE_36h DE_36h-CTCF_MA0139.2 15 bp overlap
Motif DE_36h DE_36h-CTCF_MA1929.2 31 bp overlap
Motif DE_48h DE_48h-CTCF_MA0139.2 15 bp overlap
Motif DE_48h DE_48h-CTCF_MA1929.2 31 bp overlap
ChIP GSC23 GSE139416.CTCF.GSC23 238 bp overlap
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 57 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 132 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 251 bp overlap
ELF1 4 datasets
ChIP K-562 ENCSR502OEK.ELF1.K-562 414 bp overlap
ChIP K-562 ENCSR000BMD.ELF1.K-562 231 bp overlap
ChIP K562 ENCFF457KVR 135 bp overlap
ChIP K562 ENCFF496AKI 123 bp overlap
ESRRA 3 datasets
Motif DE_12h DE_12h-ESRRA_MA0592.4 9 bp overlap
Motif DE_36h DE_36h-ESRRA_MA0592.4 9 bp overlap
Motif DE_48h DE_48h-ESRRA_MA0592.4 9 bp overlap
ESRRB 3 datasets
Motif DE_12h DE_12h-ESRRB_MA0141.4 10 bp overlap
Motif DE_36h DE_36h-ESRRB_MA0141.4 10 bp overlap
Motif DE_48h DE_48h-ESRRB_MA0141.4 10 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 265 bp overlap
Esrrg 3 datasets
Motif DE_12h DE_12h-Esrrg_MA0643.2 9 bp overlap
Motif DE_36h DE_36h-Esrrg_MA0643.2 9 bp overlap
Motif DE_48h DE_48h-Esrrg_MA0643.2 9 bp overlap
FOS 1 dataset
ChIP K-562 ENCSR000FAI.FOS.K-562 117 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 169 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 304 bp overlap
GABPB1 2 datasets
ChIP K-562 ENCSR138YYY.GABPB1.K-562 389 bp overlap
ChIP K562 ENCFF015GDS 476 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 284 bp overlap
ChIP DE DE-GATA4-2 453 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 341 bp overlap
ChIP DE DE-GATA6-2 445 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 389 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 604 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 392 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 290 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 579 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 359 bp overlap
HIVEP1 1 dataset
ChIP Hep-G2 ENCSR697WMX.HIVEP1.Hep-G2 107 bp overlap
Isl1 3 datasets
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
Motif DE_36h DE_36h-Isl1_MA1608.2 7 bp overlap
Motif DE_48h DE_48h-Isl1_MA1608.2 7 bp overlap
KDM5B 1 dataset
ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 61 bp overlap
KLF16 1 dataset
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 92 bp overlap
NANOG 1 dataset
ChIP WA09 GSE105028.NANOG.WA09 317 bp overlap
NFYA 5 datasets
ChIP Hep-G2 ENCSR124APT.NFYA.Hep-G2 184 bp overlap
ChIP K-562 GSE26439.NFYA.K-562 310 bp overlap
ChIP K-562 ENCSR000EGR.NFYA.K-562 261 bp overlap
ChIP K562 ENCFF666BET 317 bp overlap
ChIP K562 ENCFF732HOX 425 bp overlap
NFYB 8 datasets
Motif DE_12h DE_12h-NFYB_MA0502.3 9 bp overlap
Motif DE_36h DE_36h-NFYB_MA0502.3 9 bp overlap
ChIP Hep-G2 ENCSR935GZV.NFYB.Hep-G2 342 bp overlap
ChIP HepG2 ENCFF174VYX 405 bp overlap
ChIP K-562 ENCSR000EGQ.NFYB.K-562 258 bp overlap
ChIP K-562 GSE26439.NFYB.K-562 267 bp overlap
ChIP WTC11 ENCFF751ZTQ 144 bp overlap
ChIP WTC11 ENCFF751ZTQ 391 bp overlap
NFYC 2 datasets
ChIP Hep-G2 ENCSR569ARC.NFYC.Hep-G2 276 bp overlap
ChIP HepG2 ENCFF836FYP 411 bp overlap
NKX6-3 3 datasets
Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap
Motif DE_36h DE_36h-NKX6-3_MA1530.2 8 bp overlap
Motif DE_48h DE_48h-NKX6-3_MA1530.2 8 bp overlap
NR2C1 3 datasets
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
Motif DE_36h DE_36h-NR2C1_MA1535.2 6 bp overlap
Motif DE_48h DE_48h-NR2C1_MA1535.2 6 bp overlap
NR2C2 3 datasets
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
Motif DE_36h DE_36h-NR2C2_MA1536.2 6 bp overlap
Motif DE_48h DE_48h-NR2C2_MA1536.2 6 bp overlap
NR2F2 3 datasets
Motif DE_12h DE_12h-NR2F2_MA1111.2 7 bp overlap
Motif DE_36h DE_36h-NR2F2_MA1111.2 7 bp overlap
Motif DE_48h DE_48h-NR2F2_MA1111.2 7 bp overlap
NR4A1 3 datasets
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
Motif DE_36h DE_36h-NR4A1_MA1112.3 8 bp overlap
Motif DE_48h DE_48h-NR4A1_MA1112.3 8 bp overlap
NR4A2 3 datasets
Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap
Motif DE_36h DE_36h-NR4A2_MA0160.3 8 bp overlap
Motif DE_48h DE_48h-NR4A2_MA0160.3 8 bp overlap
Nr1H2 3 datasets
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_36h DE_36h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_48h DE_48h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 3 datasets
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_36h DE_36h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_48h DE_48h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 3 datasets
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_36h DE_36h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_48h DE_48h-Nr1h3_MA2337.1 6 bp overlap
Nr5A2 3 datasets
Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap
Motif DE_36h DE_36h-Nr5A2_MA0505.3 9 bp overlap
Motif DE_48h DE_48h-Nr5A2_MA0505.3 9 bp overlap
ONECUT1 1 dataset
Motif DE_12h DE_12h-ONECUT1_MA0679.3 9 bp overlap
ONECUT3 1 dataset
Motif DE_12h DE_12h-ONECUT3_MA0757.2 12 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 233 bp overlap
PKNOX1 2 datasets
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 365 bp overlap
ChIP K562 ENCFF236IUS 425 bp overlap
POLR2A 1 dataset
ChIP gastrocnemius medialis ENCFF145VIB 233 bp overlap
Ppara 3 datasets
Motif DE_12h DE_12h-Ppara_MA2338.1 7 bp overlap
Motif DE_36h DE_36h-Ppara_MA2338.1 7 bp overlap
Motif DE_48h DE_48h-Ppara_MA2338.1 7 bp overlap
Prdm4 2 datasets
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
Motif DE_36h DE_36h-Prdm4_MA1647.3 11 bp overlap
RBM25 3 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 197 bp overlap
ChIP K562 ENCFF248CGR 361 bp overlap
ChIP K562 ENCFF957ORK 361 bp overlap
SETDB1 6 datasets
ChIP HEK293 ENCFF676PLV 518 bp overlap
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 460 bp overlap
ChIP K-562 ENCSR000EWI.SETDB1.K-562 376 bp overlap
ChIP K-562 ENCSR000EWD.SETDB1.K-562 238 bp overlap
ChIP K562 ENCFF745PAW 413 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 461 bp overlap
SIX1 3 datasets
Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap
Motif DE_36h DE_36h-SIX1_MA1118.2 9 bp overlap
Motif DE_48h DE_48h-SIX1_MA1118.2 9 bp overlap
SIX2 5 datasets
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
Motif DE_36h DE_36h-SIX2_MA1119.2 11 bp overlap
Motif DE_36h DE_36h-SIX2_MA1119.2 11 bp overlap
Motif DE_48h DE_48h-SIX2_MA1119.2 11 bp overlap
SMAD1-5 1 dataset
ChIP MDA-MB-231_TGF-beta GSE92443.SMAD1-5.MDA-MB-231_TGF-beta 110 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 349 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 814 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 652 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 717 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 652 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 610 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 558 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 695 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 446 bp overlap
SMARCA4 1 dataset
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 229 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 161 bp overlap
SPI1 7 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 156 bp overlap
ChIP GM12891 ENCFF563IUT 241 bp overlap
ChIP HL-60 ENCFF645GBT 271 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 221 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 161 bp overlap
ChIP K562 ENCFF410ORC 205 bp overlap
ChIP KG-1 GSE128834.SPI1.KG-1 175 bp overlap
Six4 3 datasets
Motif DE_12h DE_12h-Six4_MA2001.2 7 bp overlap
Motif DE_36h DE_36h-Six4_MA2001.2 7 bp overlap
Motif DE_48h DE_48h-Six4_MA2001.2 7 bp overlap
TBP 1 dataset
ChIP K-562 GSE55306.TBP.K-562 377 bp overlap
TRIM24 5 datasets
ChIP K-562 ENCSR907MZR.TRIM24.K-562 338 bp overlap
ChIP K-562 ENCSR957LDM.TRIM24.K-562 206 bp overlap
ChIP K562 ENCFF616RIL 394 bp overlap
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 226 bp overlap
ChIP MOLM-13_dTRIM24 GSE100571.TRIM24.MOLM-13_dTRIM24 304 bp overlap
TRIM28 7 datasets
ChIP AF22 GSE84259.TRIM28.AF22 533 bp overlap
ChIP K-562 ENCSR000EVY.TRIM28.K-562 560 bp overlap
ChIP K-562 ENCSR474CVP.TRIM28.K-562 348 bp overlap
ChIP K562 ENCFF429WPG 370 bp overlap
ChIP K562 ENCFF671NCI 611 bp overlap
ChIP K562 ENCFF671NCI 810 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 293 bp overlap
VENTX 3 datasets
Motif DE_12h DE_12h-VENTX_MA0724.1 9 bp overlap
Motif DE_36h DE_36h-VENTX_MA0724.1 9 bp overlap
Motif DE_48h DE_48h-VENTX_MA0724.1 9 bp overlap
ZBTB33 3 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 338 bp overlap
ChIP K562 ENCFF427SDV 316 bp overlap
ChIP K562 ENCFF875HLX 263 bp overlap
ZFX 1 dataset
ChIP MCF-7 GSE102616.ZFX.MCF-7 117 bp overlap
ZIC1 3 datasets
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
Motif DE_36h DE_36h-ZIC1_MA0696.1 14 bp overlap
Motif DE_48h DE_48h-ZIC1_MA0696.1 14 bp overlap
ZIC4 3 datasets
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
Motif DE_36h DE_36h-ZIC4_MA0751.2 14 bp overlap
Motif DE_48h DE_48h-ZIC4_MA0751.2 14 bp overlap
ZIC5 3 datasets
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
Motif DE_36h DE_36h-ZIC5_MA1584.2 15 bp overlap
Motif DE_48h DE_48h-ZIC5_MA1584.2 15 bp overlap
ZNF143 1 dataset
ChIP GM12878 ENCSR936XTK.ZNF143.GM12878 237 bp overlap
ZNF276 1 dataset
ChIP Hep-G2 ENCSR076KLJ.ZNF276.Hep-G2 156 bp overlap
ZNF280A 2 datasets
ChIP K-562 ENCSR370NFS.ZNF280A.K-562 344 bp overlap
ChIP K562 ENCFF706EWX 332 bp overlap
ZNF416 2 datasets
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
Motif DE_36h DE_36h-ZNF416_MA1979.2 10 bp overlap
ZNF572 1 dataset
ChIP Hep-G2 ENCSR663CTC.ZNF572.Hep-G2 74 bp overlap
ZNF680 3 datasets
ChIP HEK293 ENCFF418WHE 277 bp overlap
ChIP HEK293 ENCSR307CKC.ZNF680.HEK293 368 bp overlap
ChIP HEK293 GSE76494.ZNF680.HEK293 251 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 57 bp overlap
ZNF93 3 datasets
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
Motif DE_36h DE_36h-ZNF93_MA1721.2 14 bp overlap
Motif DE_48h DE_48h-ZNF93_MA1721.2 14 bp overlap
Zic1::Zic2 3 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_48h DE_48h-Zic1Zic2_MA1628.2 7 bp overlap
Zic3 3 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap
Motif DE_48h DE_48h-Zic3_MA0697.3 7 bp overlap
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