chr9 : 89,695,778 – 89,695,905
127 bp 57 TFs 1 linked gene
This 127 bp open chromatin element is linked to LINC03062 and is bound by 57 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC03062 5.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:89,690,778 – 89,700,905
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
57 transcription factors
Source
Cell type
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 127 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 127 bp overlap
BRD4 2 datasets
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 127 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 127 bp overlap
CEBPD 1 dataset
Motif ES_0h ES_0h-CEBPD_MA0836.3 8 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 100 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 127 bp overlap
CTCF 2 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 127 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 106 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 127 bp overlap
EZH2 2 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 127 bp overlap
ChIP neural progenitor cell ENCFF018MKA 127 bp overlap
GATA1::TAL1 1 dataset
Motif ES_0h ES_0h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 3 datasets
ChIP SH-SY5Y ENCFF485YIB 127 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 102 bp overlap
ChIP SK-N-SH ENCFF764OZD 121 bp overlap
GATA3 1 dataset
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 61 bp overlap
GATA6 3 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 123 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 127 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 123 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 127 bp overlap
HLF 1 dataset
Motif ES_0h ES_0h-HLF_MA0043.4 9 bp overlap
HNF4A 1 dataset
Motif ES_0h ES_0h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif ES_0h ES_0h-HNF4G_MA0484.3 9 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 86 bp overlap
MEIS2 1 dataset
Motif ES_0h ES_0h-MEIS2_MA1640.2 9 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 127 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 127 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 127 bp overlap
ChIP hESC GSE18292.NANOG.hESC 75 bp overlap
NFIL3 1 dataset
Motif ES_0h ES_0h-NFIL3_MA0025.3 9 bp overlap
POLR2A 3 datasets
ChIP GM23338 ENCFF450WCS 84 bp overlap
ChIP GM23338 ENCFF450WCS 127 bp overlap
ChIP H1 ENCFF566JSR 92 bp overlap
POU1F1 1 dataset
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU2AF1 1 dataset
ChIP pre-B-cell GSE107886.POU2AF1.pre-B-cell 127 bp overlap
POU2F1 6 datasets
ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 127 bp overlap
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 127 bp overlap
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
ChIP T-47D GSE148277.POU2F1.T-47D 127 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 127 bp overlap
POU2F1::SOX2 1 dataset
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 4 datasets
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
ChIP GM12878 ENCFF207RKY 127 bp overlap
ChIP GM12891 ENCFF166YPP 127 bp overlap
ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 127 bp overlap
POU2F3 3 datasets
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 127 bp overlap
POU3F1 2 datasets
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU3F4 2 datasets
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 127 bp overlap
POU5F1 16 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 127 bp overlap
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP GM23338 ENCFF333SNB 103 bp overlap
ChIP H1 ENCFF698ZAP 91 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 127 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 120 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 127 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 104 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 109 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 120 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 127 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 127 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 127 bp overlap
ChIP hiPSC GSE149017.POU5F1.hiPSC 127 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 127 bp overlap
POU5F1B 2 datasets
Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap
Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap
RAD21 1 dataset
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 87 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 127 bp overlap
RBBP5 1 dataset
ChIP H1 ENCFF905HFL 127 bp overlap
RBPJ 2 datasets
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 119 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 127 bp overlap
SMARCA4 3 datasets
ChIP NGP GSE134626.SMARCA4.NGP 127 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 127 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 127 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 115 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 127 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 127 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 127 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 127 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
Sox11 1 dataset
Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap
Sox17 1 dataset
Motif ES_0h ES_0h-Sox17_MA0078.3 10 bp overlap
Sox6 1 dataset
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif ES_0h ES_0h-Sox7_MA2095.1 10 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 127 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 73 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 127 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 127 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 126 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 56 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 127 bp overlap
ZBTB24 1 dataset
Motif ES_0h ES_0h-ZBTB24_MA2330.1 10 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 125 bp overlap
ZKSCAN5 1 dataset
Motif ES_0h ES_0h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF232 1 dataset
ChIP WTC11 ENCFF901BGD 91 bp overlap
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