chr9 : 34,176,156 – 34,176,522
366 bp 39 TFs 1 linked gene
This 366 bp open chromatin element is linked to UBAP1 and is bound by 39 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
UBAP1 2.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:34,171,156 – 34,181,522
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
39 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP MCF-7_aza GSE85352.ARNT.MCF-7_aza 165 bp overlap
ATF3 1 dataset
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 155 bp overlap
BRD3 1 dataset
ChIP MV4-11_IBET151_5000nM GSE120715.BRD3.MV4-11_IBET151_5000nM 67 bp overlap
BRD4 1 dataset
ChIP keratinocyte GSE140992.BRD4.keratinocyte 283 bp overlap
CHD4 1 dataset
ChIP HaCaT GSE139685.CHD4.HaCaT 134 bp overlap
CREBBP 2 datasets
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 326 bp overlap
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 283 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 155 bp overlap
ESR1 3 datasets
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 200 bp overlap
ChIP breast_tumor_Male_21 GSE104399.ESR1.breast_tumor_Male_21 350 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.ESR1.primary-breast-cancer_B2_DSG 217 bp overlap
FOS 4 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 351 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 268 bp overlap
ChIP MCF-7 ENCFF282FWZ 288 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 324 bp overlap
FOSL1 2 datasets
ChIP HCT-116 ENCSR000BTE.FOSL1.HCT-116 177 bp overlap
ChIP HCT116 ENCFF540ZXN 343 bp overlap
FOSL2 3 datasets
ChIP Hep-G2 ENCSR000BHP.FOSL2.Hep-G2 162 bp overlap
ChIP MCF-7 ENCFF716UWP 283 bp overlap
ChIP MCF-7 ENCSR000BUI.FOSL2.MCF-7 176 bp overlap
FOXA1 33 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 366 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 220 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 338 bp overlap
ChIP DU145 GSE47987.FOXA1.DU145 161 bp overlap
ChIP HepG2 ENCFF740VZW 265 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 223 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 108 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 61 bp overlap
ChIP MCF-7 ENCSR126YEB.FOXA1.MCF-7 280 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 150 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 134 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 138 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 170 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 191 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 129 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 158 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 241 bp overlap
ChIP MCF-7_JC4695 GSE126004.FOXA1.MCF-7_JC4695 193 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 212 bp overlap
ChIP MCF-7_estrogen_ab1 GSE112969.FOXA1.MCF-7_estrogen_ab1 241 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 247 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 286 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 283 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 366 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 366 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 258 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 266 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 123 bp overlap
ChIP breast-cancer_ENOB-2849 GSE128018.FOXA1.breast-cancer_ENOB-2849 229 bp overlap
ChIP breast-cancer_ENOB-2852 GSE128018.FOXA1.breast-cancer_ENOB-2852 262 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 276 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 233 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 303 bp overlap
FOXA2 7 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 326 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 366 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 360 bp overlap
ChIP DE DE-FOXA2-1 366 bp overlap
ChIP DE DE-FOXA2-2 366 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 214 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 219 bp overlap
GATA3 1 dataset
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 366 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 343 bp overlap
ChIP DE DE-GATA4-2 366 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 362 bp overlap
ChIP DE DE-GATA6-2 366 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 181 bp overlap
JUN 5 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 297 bp overlap
ChIP MCF-7_E2 GSE102410.JUN.MCF-7_E2 206 bp overlap
ChIP MCF-7_TamR GSE128445.JUN.MCF-7_TamR 339 bp overlap
ChIP MCF-7_Tamoxifen GSE102410.JUN.MCF-7_Tamoxifen 228 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUN.MCF10A-Er-Src_EtOH 207 bp overlap
JUNB 2 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 211 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 189 bp overlap
JUND 4 datasets
ChIP HCT-116 ENCSR000BSA.JUND.HCT-116 133 bp overlap
ChIP HCT116 ENCFF748ZQX 307 bp overlap
ChIP HepG2 ENCFF869OPW 271 bp overlap
ChIP MCF-7 ENCSR000BSU.JUND.MCF-7 152 bp overlap
KLF4 1 dataset
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 208 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 273 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 271 bp overlap
MYC 1 dataset
ChIP U2OS_Doxy GSE77356.MYC.U2OS_Doxy 129 bp overlap
NFKB1 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 135 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 272 bp overlap
NR3C1 1 dataset
ChIP breast_tumor_Male_21 GSE104399.NR3C1.breast_tumor_Male_21 235 bp overlap
PGR 1 dataset
ChIP breast_tumor_Male_30 GSE104399.PGR.breast_tumor_Male_30 209 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 74 bp overlap
RBPJ 2 datasets
ChIP SCC_0h GSE156486.RBPJ.SCC_0h 241 bp overlap
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 293 bp overlap
RELA 1 dataset
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 313 bp overlap
SMAD3 4 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 345 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 358 bp overlap
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 263 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 240 bp overlap
SP1 2 datasets
ChIP HCT-116 ENCSR000BSF.SP1.HCT-116 175 bp overlap
ChIP HCT116 ENCFF800LBN 325 bp overlap
STAT1 1 dataset
ChIP NCI-H358 GSE79707.STAT1.NCI-H358 220 bp overlap
STAT3 8 datasets
ChIP HCC70 GSE152203.STAT3.HCC70 214 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 199 bp overlap
ChIP MCF-10A ENCSR000DOZ.STAT3.MCF-10A 151 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 130 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.STAT3.MCF10A-Er-Src_EtOH 186 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 169 bp overlap
ChIP MDA-MB-468_EtOH GSE85579.STAT3.MDA-MB-468_EtOH 222 bp overlap
ChIP NCI-H358 GSE79707.STAT3.NCI-H358 324 bp overlap
TEAD4 1 dataset
ChIP SNU-216 GSE44416.TEAD4.SNU-216 240 bp overlap
TFAP4 1 dataset
ChIP DLD-1 GSE46935.TFAP4.DLD-1 221 bp overlap
YY1AP1 1 dataset
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 271 bp overlap
ZNF384 1 dataset
ChIP Hep-G2 ENCSR101FJU.ZNF384.Hep-G2 138 bp overlap
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