chr9 : 24,939,320 24,939,935
615 bp 60 TFs 0 linked genes
This 615 bp open chromatin element has no linked target genes and is bound by 60 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:24,934,320 – 24,944,935
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 117 bp overlap
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 355 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 71 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 284 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 214 bp overlap
BARX2 1 dataset
Motif DE_12h DE_12h-BARX2_MA1471.2 9 bp overlap
BRD4 6 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 411 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 97 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 453 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 229 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 207 bp overlap
ChIP NCI-H2171 GSE101821.BRD4.NCI-H2171 80 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 177 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 190 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
EP300 3 datasets
ChIP SK-N-SH ENCFF829RWA 89 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 84 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 365 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 207 bp overlap
GATA2 5 datasets
ChIP SH-SY5Y ENCFF485YIB 400 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 61 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 365 bp overlap
ChIP SK-N-SH ENCFF764OZD 139 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 362 bp overlap
GATA3 7 datasets
ChIP BE2C GSE65664.GATA3.BE2C 343 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 408 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 414 bp overlap
ChIP NGP GSE65664.GATA3.NGP 338 bp overlap
ChIP SH-SY5Y ENCFF475HYF 222 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 390 bp overlap
ChIP SK-N-SH ENCFF040SSB 63 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-2 303 bp overlap
Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap
GATA5 1 dataset
Motif DE_12h DE_12h-GATA5_MA0766.3 8 bp overlap
GATA6 4 datasets
Motif DE_12h DE_12h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 253 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 291 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 451 bp overlap
Gata3 1 dataset
Motif DE_12h DE_12h-Gata3_MA0037.5 8 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 400 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 280 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 615 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif DE_12h DE_12h-HNF4G_MA0484.3 9 bp overlap
HOXA4 1 dataset
Motif DE_12h DE_12h-HOXA4_MA1496.2 7 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 219 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 615 bp overlap
ISL2 1 dataset
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 295 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 263 bp overlap
KDM1A 2 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 236 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 247 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 343 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 288 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 258 bp overlap
MYCN 5 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 63 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 157 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 195 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 84 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 107 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 271 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 338 bp overlap
NEUROD1 3 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 59 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 286 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 79 bp overlap
Nr2e1 1 dataset
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
PAX6 1 dataset
ChIP EndoC-betaH2 GSE87530.PAX6.EndoC-betaH2 369 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 191 bp overlap
PHOX2B 3 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 372 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 92 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 201 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 305 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 125 bp overlap
POU6F1 1 dataset
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
RAD21 3 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 65 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 226 bp overlap
ChIP SK-N-SH ENCFF747MAS 55 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 106 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 187 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 382 bp overlap
ChIP neural cell ENCFF882LXX 434 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_WT GSE138496.SMAD2-3.HGrC1_WT 145 bp overlap
SMARCA4 5 datasets
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 615 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 109 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 262 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 420 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 99 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 422 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 615 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 446 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 446 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 334 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 231 bp overlap
TRPS1 1 dataset
Motif DE_12h DE_12h-TRPS1_MA1970.2 8 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 100 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 104 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 183 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 183 bp overlap
ZNF317 1 dataset
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
ZNF93 1 dataset
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap