chr8 : 112,643,062 – 112,643,781

719 bp 86 TFs 1 linked gene

This 719 bp open chromatin element is linked to MIR2053 and is bound by 86 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
MIR2053		at TSS	At TSS	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

86 transcription factors

ALX3 1 dataset

Motif DE_12h DE_12h-ALX3_MA0634.2 6 bp overlap

AR 1 dataset

ChIP LNCaP_1F5 GSE30623.AR.LNCaP_1F5 123 bp overlap

ARGFX 1 dataset

Motif DE_12h DE_12h-ARGFX_MA1463.2 8 bp overlap

Alx1 1 dataset

Motif DE_12h DE_12h-Alx1_MA0854.2 8 bp overlap

Alx4 1 dataset

Motif DE_12h DE_12h-Alx4_MA0853.2 12 bp overlap

Arid3a 1 dataset

Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap

Arx 1 dataset

Motif DE_12h DE_12h-Arx_MA0874.2 10 bp overlap

DRGX 1 dataset

Motif DE_12h DE_12h-DRGX_MA1481.2 6 bp overlap

EMX1 1 dataset

Motif DE_12h DE_12h-EMX1_MA0612.3 6 bp overlap

EMX2 1 dataset

Motif DE_12h DE_12h-EMX2_MA0886.2 6 bp overlap

EN1 1 dataset

Motif DE_12h DE_12h-EN1_MA0027.3 6 bp overlap

EOMES 1 dataset

Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap

ESX1 1 dataset

Motif DE_12h DE_12h-ESX1_MA0644.3 7 bp overlap

EVX1 1 dataset

Motif DE_12h DE_12h-EVX1_MA0887.2 6 bp overlap

EVX2 1 dataset

Motif DE_12h DE_12h-EVX2_MA0888.2 6 bp overlap

FOXA1 7 datasets

ChIP 22Rv1 GSE96652.FOXA1.22Rv1 242 bp overlap

ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 251 bp overlap

ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 201 bp overlap

ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 228 bp overlap

ChIP T-47D_flp-ctrl GSE99479.FOXA1.T-47D_flp-ctrl 185 bp overlap

ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 180 bp overlap

ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 164 bp overlap

FOXA2 3 datasets

ChIP DE DE-FOXA2-1 553 bp overlap

ChIP DE DE-FOXA2-2 517 bp overlap

Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap

FOXA3 1 dataset

Motif DE_12h DE_12h-FOXA3_MA1683.2 7 bp overlap

FOXB1 1 dataset

Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap

FOXC1 1 dataset

Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap

FOXC2 1 dataset

Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap

FOXD2 1 dataset

Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap

FOXI1 1 dataset

Motif DE_12h DE_12h-FOXI1_MA0042.2 7 bp overlap

FOXL2 2 datasets

ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 318 bp overlap

ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 112 bp overlap

FOXP1 1 dataset

Motif DE_12h DE_12h-FOXP1_MA0481.4 7 bp overlap

FOXP4 1 dataset

Motif DE_12h DE_12h-FOXP4_MA2117.1 7 bp overlap

FOXS1 1 dataset

Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap

Foxl2 1 dataset

Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap

GSX1 1 dataset

Motif DE_12h DE_12h-GSX1_MA0892.2 6 bp overlap

HOXA1 1 dataset

Motif DE_12h DE_12h-HOXA1_MA1495.2 6 bp overlap

HOXA2 1 dataset

Motif DE_12h DE_12h-HOXA2_MA0900.3 6 bp overlap

HOXB2 1 dataset

Motif DE_12h DE_12h-HOXB2_MA0902.3 6 bp overlap

HOXB3 1 dataset

Motif DE_12h DE_12h-HOXB3_MA0903.2 6 bp overlap

HOXB5 1 dataset

Motif DE_12h DE_12h-HOXB5_MA0904.3 6 bp overlap

HOXC8 1 dataset

Motif DE_12h DE_12h-HOXC8_MA1505.2 6 bp overlap

Hmx1 1 dataset

Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap

Hmx2 1 dataset

Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap

Hmx3 1 dataset

Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap

ISL2 1 dataset

Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap

ISX 1 dataset

Motif DE_12h DE_12h-ISX_MA0654.2 6 bp overlap

LHX6 1 dataset

Motif DE_12h DE_12h-LHX6_MA0658.2 8 bp overlap

LMX1A 1 dataset

Motif DE_12h DE_12h-LMX1A_MA0702.3 7 bp overlap

LMX1B 1 dataset

Motif DE_12h DE_12h-LMX1B_MA0703.3 8 bp overlap

Lhx1 1 dataset

Motif DE_12h DE_12h-Lhx1_MA1518.3 10 bp overlap

Lhx3 1 dataset

Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap

Lhx4 1 dataset

Motif DE_12h DE_12h-Lhx4_MA0704.2 6 bp overlap

Lhx8 1 dataset

Motif DE_12h DE_12h-Lhx8_MA0705.2 6 bp overlap

MGA::EVX1 1 dataset

Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap

MIXL1 1 dataset

Motif DE_12h DE_12h-MIXL1_MA0662.2 6 bp overlap

MNX1 1 dataset

Motif DE_12h DE_12h-MNX1_MA0707.3 6 bp overlap

NKX6-1 1 dataset

Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap

NKX6-2 1 dataset

Motif DE_12h DE_12h-NKX6-2_MA0675.2 6 bp overlap

NOTO 1 dataset

Motif DE_12h DE_12h-NOTO_MA0710.2 7 bp overlap

Nkx3-2 1 dataset

Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap

PAX4 1 dataset

Motif DE_12h DE_12h-PAX4_MA0068.2 8 bp overlap

PDX1 1 dataset

Motif DE_12h DE_12h-PDX1_MA0132.3 6 bp overlap

POU2F1 1 dataset

Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap

POU2F2 1 dataset

Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap

POU2F3 2 datasets

Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap

POU3F1 1 dataset

Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap

POU3F4 1 dataset

Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap

POU5F1 2 datasets

Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap

POU5F1B 1 dataset

Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap

POU6F1 1 dataset

Motif DE_12h DE_12h-POU6F1_MA0628.2 6 bp overlap

PRRX1 1 dataset

Motif DE_12h DE_12h-PRRX1_MA0716.2 6 bp overlap

RAX2 1 dataset

Motif DE_12h DE_12h-RAX2_MA0717.2 6 bp overlap

SHOX 1 dataset

Motif DE_12h DE_12h-SHOX_MA0630.2 6 bp overlap

SMAD2-3 1 dataset

ChIP HGrC1_WT-TGF GSE138496.SMAD2-3.HGrC1_WT-TGF 175 bp overlap

SMARCA4 1 dataset

ChIP hiPSC GSE124903.SMARCA4.hiPSC 195 bp overlap

SMARCC1 1 dataset

ChIP hiPSC GSE124903.SMARCC1.hiPSC 206 bp overlap

SOX21 1 dataset

Motif DE_12h DE_12h-SOX21_MA0866.1 15 bp overlap

Shox2 1 dataset

Motif DE_12h DE_12h-Shox2_MA0720.2 6 bp overlap

TBR1 1 dataset

Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap

TBX2 1 dataset

Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap

TBX20 1 dataset

Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap

TBX3 1 dataset

Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap

TLX2 1 dataset

Motif DE_12h DE_12h-TLX2_MA1577.2 6 bp overlap

UNCX 1 dataset

Motif DE_12h DE_12h-UNCX_MA0721.2 6 bp overlap

VAX1 1 dataset

Motif DE_12h DE_12h-VAX1_MA0722.2 7 bp overlap

VAX2 1 dataset

Motif DE_12h DE_12h-VAX2_MA0723.3 6 bp overlap

VSX1 1 dataset

Motif DE_12h DE_12h-VSX1_MA0725.2 7 bp overlap

VSX2 1 dataset

Motif DE_12h DE_12h-VSX2_MA0726.2 7 bp overlap

ZNF652 1 dataset

Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap

ZNF766 1 dataset

Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap

ZSCAN16 1 dataset

Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap

mix-a 1 dataset

Motif DE_12h DE_12h-mix-a_MA0621.2 7 bp overlap