chr8 : 56,070,375 56,070,710
335 bp 61 TFs 3 linked genes
This 335 bp open chromatin element is linked to SNORD54, RPS20, and CERNA3 and is bound by 61 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
SNORD54 3.2 kb Proximal Proximity
RPS20 3.8 kb Proximal Proximity
CERNA3 3.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr8:56,065,375 – 56,075,710
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
AGO1 6 datasets
ChIP K-562 GSE120104.AGO1.K-562 335 bp overlap
ChIP K-562 ENCSR641BSL.AGO1.K-562 335 bp overlap
ChIP K562 ENCFF025NLP 335 bp overlap
ChIP K562 ENCFF025NLP 254 bp overlap
ChIP K562 ENCFF741BCI 335 bp overlap
ChIP K562 ENCFF741BCI 201 bp overlap
AGO2 3 datasets
ChIP HepG2 ENCFF252VFI 335 bp overlap
ChIP HepG2 ENCFF252VFI 180 bp overlap
ChIP HepG2 ENCFF773YDL 335 bp overlap
AR 1 dataset
ChIP WTC11 ENCFF267GQJ 317 bp overlap
BACH2 1 dataset
ChIP B-cell_IL2 GSE102460.BACH2.B-cell_IL2 144 bp overlap
BCL3 2 datasets
ChIP GM12878 ENCFF854PAY 275 bp overlap
ChIP GM12878 ENCSR000BNQ.BCL3.GM12878 101 bp overlap
BRD4 2 datasets
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 123 bp overlap
ChIP MV4-11_DMSO GSE71776.BRD4.MV4-11_DMSO 170 bp overlap
CDK8 1 dataset
ChIP HCT-116_NOMO GSE38258.CDK8.HCT-116_NOMO 269 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 166 bp overlap
CHD2 2 datasets
ChIP H1 ENCFF991MKH 224 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 129 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 201 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 115 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF262VBH 172 bp overlap
ChIP BLaER1 ENCFF364PUR 254 bp overlap
DMTF1 1 dataset
ChIP K562 ENCFF947QUY 90 bp overlap
DPF2 1 dataset
ChIP BIN-67_ctrl GSE117734.DPF2.BIN-67_ctrl 119 bp overlap
E2F8 1 dataset
ChIP K-562 ENCSR953DVM.E2F8.K-562 335 bp overlap
ERG 1 dataset
ChIP WTC11 ENCFF011YUL 154 bp overlap
ESR1 1 dataset
ChIP MCF-7_SHCTR_E2_TNF GSE59530.ESR1.MCF-7_SHCTR_E2_TNF 124 bp overlap
FOSB 2 datasets
ChIP A-549 ENCSR918GHT.FOSB.A-549 156 bp overlap
ChIP A549 ENCFF029EEU 226 bp overlap
FOSL1 1 dataset
ChIP 143B GSE74230.FOSL1.143B 124 bp overlap
GABPB1 2 datasets
ChIP K562 ENCFF885NMS 248 bp overlap
ChIP K562 ENCFF885NMS 335 bp overlap
HDAC8 1 dataset
ChIP K-562 ENCSR835TCD.HDAC8.K-562 270 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 138 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 191 bp overlap
HMBOX1 2 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 95 bp overlap
ChIP K562 ENCFF055GAZ 203 bp overlap
IFNA1 1 dataset
ChIP Huh-7_NS5 GSE110511.IFNA1.Huh-7_NS5 254 bp overlap
JUN 3 datasets
ChIP A549 ENCFF191QZG 147 bp overlap
ChIP A549 ENCFF846DUV 278 bp overlap
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 170 bp overlap
JUND 2 datasets
ChIP H1 ENCFF468JZD 179 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 94 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 335 bp overlap
KMT2A 4 datasets
ChIP IMS-M2_DMSO GSE129636.KMT2A.IMS-M2_DMSO 237 bp overlap
ChIP MOLM-13_VTP-d3-180110 GSE127507.KMT2A.MOLM-13_VTP-d3-180110 282 bp overlap
ChIP OCI-AML-3_VTP GSE129636.KMT2A.OCI-AML-3_VTP 335 bp overlap
ChIP RS4-11_DMSO-D3-180402 GSE127507.KMT2A.RS4-11_DMSO-D3-180402 304 bp overlap
MORC2 1 dataset
ChIP HeLa_V5-MORC2-KO-W505A-MORC2-mut GSE95451.MORC2.HeLa_V5-MORC2-KO-W505A-MORC2-mut 335 bp overlap
MPHOSPH8 2 datasets
ChIP H9 GSE95374.MPHOSPH8.H9 59 bp overlap
ChIP H9 GSE95374.MPHOSPH8.H9 169 bp overlap
MTA3 1 dataset
ChIP GM12878 ENCFF681QPL 273 bp overlap
MYBL2 2 datasets
ChIP MCF-10A_DOX GSE115787.MYBL2.MCF-10A_DOX 250 bp overlap
ChIP MCF-10A_ctrl GSE115787.MYBL2.MCF-10A_ctrl 255 bp overlap
MYC 2 datasets
ChIP CC-LP-1 GSE124430.MYC.CC-LP-1 87 bp overlap
ChIP CD34 GSE85488.MYC.CD34 269 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 322 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_alpha-amanitin-30min GSE118494.NCAPH2.IMR-90_alpha-amanitin-30min 252 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 200 bp overlap
NR3C1 2 datasets
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 88 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 335 bp overlap
PAX8 1 dataset
ChIP K-562 ENCSR274CGK.PAX8.K-562 224 bp overlap
PML 1 dataset
ChIP K562 ENCFF801LKH 224 bp overlap
POLR2A 46 datasets
ChIP GM12878 ENCFF412KAE 335 bp overlap
ChIP GM12878 ENCFF521FXC 278 bp overlap
ChIP GM12891 ENCFF127ICP 128 bp overlap
ChIP GM12891 ENCFF379FCI 326 bp overlap
ChIP GM12892 ENCFF506PGQ 335 bp overlap
ChIP GM12892 ENCFF542ZFO 184 bp overlap
ChIP GM12892 ENCFF542ZFO 155 bp overlap
ChIP GM18505 ENCFF311CYB 260 bp overlap
ChIP GM18951 ENCFF079KKO 335 bp overlap
ChIP GM19099 ENCFF726IBN 96 bp overlap
ChIP GM19193 ENCFF599VTO 331 bp overlap
ChIP GM19193 ENCFF599VTO 106 bp overlap
ChIP GM23338 ENCFF450WCS 335 bp overlap
ChIP GM23338 ENCFF450WCS 88 bp overlap
ChIP H1 ENCFF566JSR 335 bp overlap
ChIP H1 ENCFF770YBQ 335 bp overlap
ChIP H1 ENCFF833NJP 335 bp overlap
ChIP H54 ENCFF398BXN 280 bp overlap
ChIP HCT116 ENCFF508RDJ 332 bp overlap
ChIP HeLa-S3 ENCFF045HUU 323 bp overlap
ChIP HeLa-S3 ENCFF224LWS 335 bp overlap
ChIP HeLa-S3 ENCFF455YYQ 151 bp overlap
ChIP HeLa-S3 ENCFF773DNG 222 bp overlap
ChIP HeLa-S3 ENCFF773DNG 208 bp overlap
ChIP HepG2 ENCFF252NAR 335 bp overlap
ChIP HepG2 ENCFF350RIU 335 bp overlap
ChIP HepG2 ENCFF718XAJ 173 bp overlap
ChIP HepG2 ENCFF718XAJ 267 bp overlap
ChIP K562 ENCFF214YGX 143 bp overlap
ChIP K562 ENCFF215CWW 335 bp overlap
ChIP K562 ENCFF262YXJ 315 bp overlap
ChIP K562 ENCFF262YXJ 89 bp overlap
ChIP MCF-7 ENCFF164XWP 233 bp overlap
ChIP MCF-7 ENCFF309IKZ 257 bp overlap
ChIP MCF-7 ENCFF411WCU 247 bp overlap
ChIP PFSK-1 ENCFF576NIT 332 bp overlap
ChIP PFSK-1 ENCFF576NIT 176 bp overlap
ChIP Raji ENCFF613VGX 335 bp overlap
ChIP SK-N-MC ENCFF088IVG 296 bp overlap
ChIP SK-N-MC ENCFF088IVG 327 bp overlap
ChIP SK-N-MC ENCFF088IVG 76 bp overlap
ChIP SK-N-SH ENCFF683PFH 186 bp overlap
ChIP erythroblast ENCFF498VMR 335 bp overlap
ChIP erythroblast ENCFF498VMR 103 bp overlap
ChIP spleen ENCFF446ZGT 280 bp overlap
ChIP spleen ENCFF706IUS 335 bp overlap
POLR2G 5 datasets
ChIP HepG2 ENCFF241AEG 335 bp overlap
ChIP K562 ENCFF047BLG 229 bp overlap
ChIP K562 ENCFF047BLG 125 bp overlap
ChIP K562 ENCFF648YPL 208 bp overlap
ChIP K562 ENCFF648YPL 222 bp overlap
POLR2H 1 dataset
ChIP K562 ENCFF377NHG 92 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 260 bp overlap
RBFOX2 2 datasets
ChIP K562 ENCFF196WTG 266 bp overlap
ChIP K562 ENCFF967GRF 269 bp overlap
RELA 1 dataset
ChIP U2OS_10Gy_2h_recovery GSE109996.RELA.U2OS_10Gy_2h_recovery 69 bp overlap
RPA2_phospho 2 datasets
ChIP HeLa GSE108172.RPA2_phospho.HeLa 300 bp overlap
ChIP HeLa_shASF GSE108172.RPA2_phospho.HeLa_shASF 170 bp overlap
SIN3A 1 dataset
ChIP H1 ENCFF896IJG 150 bp overlap
SMAD3 3 datasets
ChIP H69_4Veh GSE145250.SMAD3.H69_4Veh 256 bp overlap
ChIP H69_5TGF GSE145250.SMAD3.H69_5TGF 335 bp overlap
ChIP H69_5Veh GSE145250.SMAD3.H69_5Veh 335 bp overlap
SMAD5 4 datasets
ChIP GM12878 ENCFF178LKN 275 bp overlap
ChIP GM12878 ENCSR251OVJ.SMAD5.GM12878 63 bp overlap
ChIP K-562 ENCSR000FCD.SMAD5.K-562 99 bp overlap
ChIP K562 ENCFF941FJJ 152 bp overlap
SSRP1 2 datasets
ChIP Hep-G2 ENCSR571PDN.SSRP1.Hep-G2 85 bp overlap
ChIP HepG2 ENCFF540BLL 296 bp overlap
SUPT5H 11 datasets
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 200 bp overlap
ChIP HCT-116_DMSO_pSer666 GSE138548.SUPT5H.HCT-116_DMSO_pSer666 257 bp overlap
ChIP HCT-116_DMSO_pThr806 GSE138548.SUPT5H.HCT-116_DMSO_pThr806 335 bp overlap
ChIP HCT-116_Nut3 GSE138548.SUPT5H.HCT-116_Nut3 269 bp overlap
ChIP HeLa GSE125534.SUPT5H.HeLa 335 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 95 bp overlap
ChIP K562 ENCFF902PAW 335 bp overlap
ChIP U2OS_DMSO GSE115365.SUPT5H.U2OS_DMSO 335 bp overlap
ChIP U2OS_siMYC GSE115365.SUPT5H.U2OS_siMYC 162 bp overlap
ChIP U2OS_siMYC_High GSE115365.SUPT5H.U2OS_siMYC_High 111 bp overlap
ChIP U2OS_siMYC_ON GSE115365.SUPT5H.U2OS_siMYC_ON 144 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 230 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 167 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 125 bp overlap
ZNF121 7 datasets
ChIP HEK293 ENCFF839FUF 335 bp overlap
ChIP HEK293 GSE76494.ZNF121.HEK293 201 bp overlap
ChIP HEK293 ENCSR224QDY.ZNF121.HEK293 254 bp overlap
ChIP Hep-G2 ENCSR945QEW.ZNF121.Hep-G2 236 bp overlap
ChIP HepG2 ENCFF343YSL 335 bp overlap
ChIP K562 ENCFF314GND 335 bp overlap
ChIP WTC11 ENCFF291API 297 bp overlap
ZNF425 1 dataset
ChIP WTC11 ENCFF359IXT 220 bp overlap
ZNF671 1 dataset
ChIP WTC11 ENCFF053HBV 189 bp overlap