chr8 : 8,408,479 – 8,409,016
537 bp 53 TFs 1 linked gene
This 537 bp open chromatin element is linked to PRAG1 and is bound by 53 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PRAG1 22.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr8:8,403,479 – 8,414,016
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
53 transcription factors
Source
Cell type
AR 21 datasets
ChIP 22Rv1_R1881 GSE80742.AR.22Rv1_R1881 115 bp overlap
ChIP LNCaP GSE85558.AR.LNCaP 67 bp overlap
ChIP LNCaP ERP003503.AR.LNCaP 279 bp overlap
ChIP LNCaP GSE110655.AR.LNCaP 273 bp overlap
ChIP LNCaP GSE64656.AR.LNCaP 230 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-744 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-744 61 bp overlap
ChIP LNCaP_DSG GSE114737.AR.LNCaP_DSG 53 bp overlap
ChIP LNCaP_ETOH GSE69043.AR.LNCaP_ETOH 119 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 385 bp overlap
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 153 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 148 bp overlap
ChIP LNCaP_SHCTR_R1881 GSE37345.AR.LNCaP_SHCTR_R1881 127 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 79 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 166 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 267 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 301 bp overlap
ChIP VCaP-LTAD_DHT_1nM GSE94577.AR.VCaP-LTAD_DHT_1nM 74 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.AR.primary-prostate-cancer_P2_DSG 54 bp overlap
ChIP prostate-cancer GSE136128.AR.prostate-cancer 236 bp overlap
ChIP prostate-cancer_PDX_141 GSE130408.AR.prostate-cancer_PDX_141 57 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.AR.prostate-cancer_PDX_167 200 bp overlap
BRD4 3 datasets
ChIP 22Rv1_DHT-DMSO GSE118247.BRD4.22Rv1_DHT-DMSO 195 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 324 bp overlap
ChIP LNCaP-clone-FGC_DHT-Enzalutamide GSE118247.BRD4.LNCaP-clone-FGC_DHT-Enzalutamide 177 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 247 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 226 bp overlap
CTCF 2 datasets
ChIP neural ENCSR822CEA.CTCF.neural 341 bp overlap
ChIP neural cell ENCFF335ADI 379 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 400 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 132 bp overlap
EP300 1 dataset
ChIP neural ENCSR843ZUP.EP300.neural 133 bp overlap
ESR1 13 datasets
ChIP MCF-7_D538G_DMSO GSE148277.ESR1.MCF-7_D538G_DMSO 241 bp overlap
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 94 bp overlap
ChIP MCF-7_E2+4OHT GSE119702.ESR1.MCF-7_E2+4OHT 158 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 184 bp overlap
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 183 bp overlap
ChIP MCF-7_OHT GSE119702.ESR1.MCF-7_OHT 158 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 201 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 184 bp overlap
ChIP MCF-7_shFbxo GSE119702.ESR1.MCF-7_shFbxo 217 bp overlap
ChIP MCF-7_shFbxo_E2 GSE119702.ESR1.MCF-7_shFbxo_E2 217 bp overlap
ChIP MCF-7_shFbxo_E2_4OHT GSE119702.ESR1.MCF-7_shFbxo_E2_4OHT 160 bp overlap
ChIP MCF-7_shFbxo_OHT GSE119702.ESR1.MCF-7_shFbxo_OHT 160 bp overlap
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 182 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 216 bp overlap
FOXA1 1 dataset
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 283 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 496 bp overlap
ChIP DE DE-FOXA2-2 477 bp overlap
FOXO1-PAX3 1 dataset
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 297 bp overlap
GATA1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 138 bp overlap
GATA2 5 datasets
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 345 bp overlap
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 225 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 268 bp overlap
ChIP WA09 GSE105081.GATA2.WA09 429 bp overlap
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 189 bp overlap
GATA3 8 datasets
ChIP MCF-7 ENCFF352QVM 474 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 298 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 175 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 318 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 333 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 360 bp overlap
ChIP MCF-7_ICI GSE81510.GATA3.MCF-7_ICI 254 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 177 bp overlap
GATA3_Nter 1 dataset
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 164 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 537 bp overlap
ChIP DE DE-GATA4-2 537 bp overlap
ChIP foregut GSE117136.GATA4.foregut 479 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 500 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 527 bp overlap
GATA6 15 datasets
ChIP DE DE-GATA6-1 524 bp overlap
ChIP DE DE-GATA6-2 530 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 409 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 537 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 280 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 537 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 537 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 533 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 140 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 537 bp overlap
ChIP foregut GSE117136.GATA6.foregut 537 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 484 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 320 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 334 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 364 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 201 bp overlap
HNF4G 1 dataset
ChIP 22Rv1 GSE85558.HNF4G.22Rv1 260 bp overlap
HOXB13 1 dataset
ChIP prostate_2030_T GSE130408.HOXB13.prostate_2030_T 53 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 305 bp overlap
MAFF 1 dataset
ChIP HepG2 ENCFF452YUT 220 bp overlap
MAFK 1 dataset
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 164 bp overlap
MORC2 1 dataset
ChIP HeLa_V5-MORC2-KO GSE95451.MORC2.HeLa_V5-MORC2-KO 148 bp overlap
MYOG 1 dataset
ChIP RH4 GSE83726.MYOG.RH4 222 bp overlap
NANOG 1 dataset
ChIP LNCaP_pNanog1_Dox GSE74799.NANOG.LNCaP_pNanog1_Dox 234 bp overlap
NEUROG2 2 datasets
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 174 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 191 bp overlap
NR3C1 3 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 129 bp overlap
ChIP HeLa-B2_GRKD_DMSO GSE24518.NR3C1.HeLa-B2_GRKD_DMSO 62 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.NR3C1.LNCaP_1F5_SIFOXA1 105 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 299 bp overlap
PGR 1 dataset
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 387 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 307 bp overlap
POU2F1 1 dataset
ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 534 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 195 bp overlap
RAD21 1 dataset
ChIP neural ENCSR198ZYJ.RAD21.neural 226 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 189 bp overlap
RNF2 1 dataset
ChIP K-562 ENCSR820GND.RNF2.K-562 136 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 506 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 202 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 523 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 356 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 381 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 364 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 165 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 193 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 382 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 359 bp overlap
SP1 1 dataset
ChIP Hep-G2 ENCSR460YAM.SP1.Hep-G2 123 bp overlap
TEAD1 1 dataset
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 230 bp overlap
TEAD4 3 datasets
ChIP MCF-7_BLRP_WT_E2 GSE125594.TEAD4.MCF-7_BLRP_WT_E2 263 bp overlap
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 170 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 154 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 198 bp overlap
TFAP2C 1 dataset
ChIP WA09 GSE105081.TFAP2C.WA09 179 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 215 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 137 bp overlap
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