chr7 : 94,514,217 – 94,514,860
643 bp 56 TFs 1 linked gene
This 643 bp open chromatin element is linked to CASD1 and is bound by 56 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CASD1 4.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:94,509,217 – 94,519,860
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
56 transcription factors
Source
Cell type
AR 8 datasets
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 280 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 197 bp overlap
ChIP MDA-MB-453 ERP001226.AR.MDA-MB-453 174 bp overlap
ChIP MDA-MB-453 ERP001226.AR.MDA-MB-453 205 bp overlap
ChIP MDA-MB-453_DHT GSE74069.AR.MDA-MB-453_DHT 236 bp overlap
ChIP MDA-MB-453_MPA GSE74069.AR.MDA-MB-453_MPA 234 bp overlap
ChIP MDA-MB-453_R1881_SICTR GSE70161.AR.MDA-MB-453_R1881_SICTR 108 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 276 bp overlap
BAF155 1 dataset
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 555 bp overlap
BRD4 2 datasets
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 165 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 140 bp overlap
CDX2 2 datasets
ChIP LS180 GSE31939.CDX2.LS180 224 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 255 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 255 bp overlap
ERG 2 datasets
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 257 bp overlap
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 194 bp overlap
ESR1 1 dataset
ChIP MCF-7_Veh_sc GSE117569.ESR1.MCF-7_Veh_sc 623 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 365 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 282 bp overlap
FOXA1 5 datasets
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 362 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 206 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 595 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 598 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 220 bp overlap
FOXA2 5 datasets
ChIP DE DE-FOXA2-1 446 bp overlap
ChIP DE DE-FOXA2-2 451 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 239 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 451 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 643 bp overlap
GATA1 2 datasets
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 181 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 147 bp overlap
GATA2 6 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 168 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 168 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 217 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 180 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 331 bp overlap
ChIP WA09 GSE105081.GATA2.WA09 170 bp overlap
GATA3 11 datasets
ChIP MCF-7 GSE133072.GATA3.MCF-7 179 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 141 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 219 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 165 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 203 bp overlap
ChIP SH-SY5Y ENCFF475HYF 395 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 409 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 180 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 287 bp overlap
ChIP SK-N-SH ENCFF040SSB 365 bp overlap
ChIP WA09 GSE105081.GATA3.WA09 149 bp overlap
GATA4 7 datasets
ChIP A-549 GSE85002.GATA4.A-549 210 bp overlap
ChIP DE DE-GATA4-1 415 bp overlap
ChIP DE DE-GATA4-2 561 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 643 bp overlap
ChIP foregut GSE117136.GATA4.foregut 633 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 518 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 386 bp overlap
GATA6 16 datasets
ChIP AGS GSE51705.GATA6.AGS 205 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 255 bp overlap
ChIP DE DE-GATA6-1 417 bp overlap
ChIP DE DE-GATA6-2 602 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 439 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 564 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 509 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 571 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 494 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 188 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 454 bp overlap
ChIP foregut GSE117136.GATA6.foregut 487 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 366 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 496 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 349 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 398 bp overlap
HNF1B 1 dataset
ChIP PANC-1_HNF1B-OE GSE119930.HNF1B.PANC-1_HNF1B-OE 581 bp overlap
HOXB13 1 dataset
ChIP LNCaP GSE56288.HOXB13.LNCaP 210 bp overlap
HOXB8 1 dataset
ChIP PANC-1 GSE119930.HOXB8.PANC-1 592 bp overlap
KLF3 1 dataset
ChIP HEK293 GSE69739.KLF3.HEK293 175 bp overlap
KLF5 1 dataset
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 193 bp overlap
KMT2A 8 datasets
ChIP HEK293T_C-term GSE90762.KMT2A.HEK293T_C-term 332 bp overlap
ChIP HEK293T_C-term_C104 GSE90762.KMT2A.HEK293T_C-term_C104 397 bp overlap
ChIP HEK293T_C-term_C49 GSE90762.KMT2A.HEK293T_C-term_C49 394 bp overlap
ChIP HEK293T_N-term GSE90762.KMT2A.HEK293T_N-term 416 bp overlap
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 330 bp overlap
ChIP HEK293T_N-term_shCtrl GSE90762.KMT2A.HEK293T_N-term_shCtrl 290 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 393 bp overlap
ChIP MCF-7_C-term_CX4945 GSE90762.KMT2A.MCF-7_C-term_CX4945 155 bp overlap
LMO2 1 dataset
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 234 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 194 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 257 bp overlap
MYB 1 dataset
ChIP Loucy GSE94000.MYB.Loucy 615 bp overlap
NR2F6 1 dataset
ChIP K-562 ENCSR707QWA.NR2F6.K-562 193 bp overlap
NUP98-HOXA9 1 dataset
ChIP HEK293-FT GSE62586.NUP98-HOXA9.HEK293-FT 261 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCFF875BDB 403 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 214 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 175 bp overlap
PKNOX1 3 datasets
ChIP HEK293T ENCFF174WDB 256 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 314 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 402 bp overlap
PRDM4 1 dataset
ChIP HEK293 ENCFF069PHD 385 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 620 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 643 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 462 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 439 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 215 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 503 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 417 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 402 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 365 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 375 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 344 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 367 bp overlap
SMAD3 1 dataset
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 121 bp overlap
SMARCA4 4 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 394 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 507 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 324 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 643 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 62 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 278 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 527 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 279 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 252 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 255 bp overlap
ChIP K562 ENCFF059YCJ 336 bp overlap
SP5_Zebrafish 2 datasets
ChIP HEK293_Zebrafish_dDBD GSE121316.SP5_Zebrafish.HEK293_Zebrafish_dDBD 220 bp overlap
ChIP HEK293_dDBD GSE110277.SP5_Zebrafish.HEK293_dDBD 163 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 445 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 571 bp overlap
SPI1 8 datasets
ChIP BDMC_donorG GSE128834.SPI1.BDMC_donorG 151 bp overlap
ChIP BDMC_donorH GSE128834.SPI1.BDMC_donorH 215 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 242 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 182 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 294 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 100 bp overlap
ChIP KG-1 GSE128834.SPI1.KG-1 162 bp overlap
ChIP RS4-11_DEX GSE71616.SPI1.RS4-11_DEX 280 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 343 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 149 bp overlap
TCF7L2 3 datasets
ChIP HEK293 ENCFF513JQN 505 bp overlap
ChIP HEK293 ENCFF513JQN 407 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 567 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 359 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 315 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 270 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 643 bp overlap
ChIP HEK293 ENCFF784SLD 305 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 145 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 428 bp overlap
ZNF580 1 dataset
ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 409 bp overlap
ZNF660 1 dataset
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 177 bp overlap
ZNF843 1 dataset
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 295 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 643 bp overlap
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