chr6 : 55,250,448 – 55,250,899

451 bp 72 TFs 0 linked genes

This 451 bp open chromatin element has no linked target genes and is bound by 72 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

72 transcription factors

ASCL1 2 datasets

Motif ES_0h ES_0h-ASCL1_MA1100.3 8 bp overlap

Motif ES_0h ES_0h-ASCL1_MA1631.2 9 bp overlap

BRD4 2 datasets

ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 201 bp overlap

ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 229 bp overlap

DUX4 1 dataset

ChIP WA01 GSE94322.DUX4.WA01 217 bp overlap

E2F6 2 datasets

Motif ES_0h ES_0h-E2F6_MA0471.3 8 bp overlap

ChIP WA01 ENCSR000BSI.E2F6.WA01 108 bp overlap

ELK1::SREBF2 1 dataset

Motif ES_0h ES_0h-ELK1SREBF2_MA1933.2 15 bp overlap

ETV2 1 dataset

Motif ES_0h ES_0h-ETV2_MA0762.2 9 bp overlap

EZH1 1 dataset

ChIP ProEs GSE59087.EZH1.ProEs 160 bp overlap

FIGLA 1 dataset

Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap

FOXD2 1 dataset

Motif ES_0h ES_0h-FOXD2_MA0847.4 11 bp overlap

FOXD3 1 dataset

Motif ES_0h ES_0h-FOXD3_MA0041.3 14 bp overlap

GATA1::TAL1 1 dataset

Motif ES_0h ES_0h-GATA1TAL1_MA0140.3 17 bp overlap

GATA4 3 datasets

Motif ES_0h ES_0h-GATA4_MA0482.3 8 bp overlap

ChIP foregut GSE117136.GATA4.foregut 265 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 305 bp overlap

GATA5 1 dataset

Motif ES_0h ES_0h-GATA5_MA0766.3 8 bp overlap

GATA6 5 datasets

ChIP DE_D1 S09-DE-d1-GATA6-exp1 353 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 427 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 288 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 436 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 349 bp overlap

HDAC2 1 dataset

ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 241 bp overlap

IKZF1 1 dataset

Motif ES_0h ES_0h-IKZF1_MA1508.2 8 bp overlap

ISL2 1 dataset

Motif ES_0h ES_0h-ISL2_MA0914.2 6 bp overlap

Irf1 1 dataset

Motif ES_0h ES_0h-Irf1_MA0050.4 11 bp overlap

JUN 1 dataset

ChIP DE_D2 S02-DE-d2-JUN-exp1 384 bp overlap

MAX 1 dataset

ChIP WA01 ENCSR000EUP.MAX.WA01 213 bp overlap

MEIS1 1 dataset

Motif ES_0h ES_0h-MEIS1_MA1639.2 9 bp overlap

MGA::EVX1 2 datasets

Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap

Motif ES_0h ES_0h-MGAEVX1_MA1960.2 11 bp overlap

MORC2 1 dataset

ChIP H9 GSE95374.MORC2.H9 194 bp overlap

MSANTD3 1 dataset

Motif ES_0h ES_0h-MSANTD3_MA1523.2 7 bp overlap

MTA2 1 dataset

ChIP RH4 GSE155861.MTA2.RH4 451 bp overlap

MXI1 2 datasets

Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap

Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap

MYOD1 3 datasets

Motif ES_0h ES_0h-MYOD1_MA0499.3 9 bp overlap

ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 195 bp overlap

ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 189 bp overlap

NANOG 10 datasets

ChIP GM23338 ENCFF065NZG 274 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 195 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 451 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 355 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 141 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 434 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 265 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 330 bp overlap

ChIP hESC GSE20650.NANOG.hESC 203 bp overlap

ChIP hESC GSE18292.NANOG.hESC 189 bp overlap

NIPBL 2 datasets

ChIP hESC GSE64758.NIPBL.hESC 185 bp overlap

ChIP hESC_activin GSE64758.NIPBL.hESC_activin 220 bp overlap

Nkx3-2 1 dataset

Motif ES_0h ES_0h-Nkx3-2_MA0122.4 10 bp overlap

Nrf1 1 dataset

Motif ES_0h ES_0h-Nrf1_MA0506.3 12 bp overlap

PAX3 1 dataset

Motif ES_0h ES_0h-PAX3_MA0780.1 10 bp overlap

POU2F1 1 dataset

Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap

POU2F3 2 datasets

Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap

ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 152 bp overlap

POU3F1 1 dataset

Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap

POU3F2 3 datasets

Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap

Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap

POU3F4 1 dataset

Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap

POU5F1 2 datasets

Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 343 bp overlap

POU5F1B 1 dataset

Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap

PRDM9 1 dataset

Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap

Pax7 1 dataset

Motif ES_0h ES_0h-Pax7_MA0680.3 10 bp overlap

Pou5f1::Sox2 1 dataset

Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap

RARA 1 dataset

Motif ES_0h ES_0h-RARA_MA0729.1 18 bp overlap

RBPJ 1 dataset

Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap

Rarg 1 dataset

Motif ES_0h ES_0h-Rarg_MA0860.1 17 bp overlap

SMAD3 1 dataset

ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 148 bp overlap

SMARCA4 3 datasets

ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 318 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 236 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 255 bp overlap

SMARCB1 1 dataset

ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 231 bp overlap

SMARCC1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 242 bp overlap

SNAI1 1 dataset

Motif ES_0h ES_0h-SNAI1_MA1558.2 7 bp overlap

SNAI2 1 dataset

Motif ES_0h ES_0h-SNAI2_MA0745.3 8 bp overlap

SNAI3 1 dataset

Motif ES_0h ES_0h-SNAI3_MA1559.2 9 bp overlap

Stat2 1 dataset

Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap

TCF12 2 datasets

Motif ES_0h ES_0h-TCF12_MA1648.2 7 bp overlap

ChIP WA01 ENCSR000BIT.TCF12.WA01 119 bp overlap

TCF3 1 dataset

Motif ES_0h ES_0h-TCF3_MA0522.4 7 bp overlap

TCF4 1 dataset

Motif ES_0h ES_0h-TCF4_MA0830.3 8 bp overlap

TEAD1 1 dataset

ChIP WTC11 ENCFF502QUV 312 bp overlap

TFAP2C 1 dataset

ChIP HCC1954 GSE126897.TFAP2C.HCC1954 204 bp overlap

TFEB 1 dataset

Motif ES_0h ES_0h-TFEB_MA0692.2 8 bp overlap

THRB 1 dataset

Motif ES_0h ES_0h-THRB_MA1576.2 18 bp overlap

TP73 1 dataset

Motif ES_0h ES_0h-TP73_MA0861.2 16 bp overlap

Thap11 1 dataset

Motif ES_0h ES_0h-Thap11_MA1573.2 14 bp overlap

USF1 4 datasets

Motif DE_12h DE_12h-USF1_MA0093.4 10 bp overlap

Motif ES_0h ES_0h-USF1_MA0093.4 10 bp overlap

ChIP H1 ENCFF090WVU 241 bp overlap

ChIP WA01 ENCSR000BIU.USF1.WA01 175 bp overlap

ZEB1 1 dataset

Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap

ZKSCAN5 1 dataset

Motif ES_0h ES_0h-ZKSCAN5_MA1652.2 9 bp overlap

ZNF331 3 datasets

Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap

Motif ES_0h ES_0h-ZNF331_MA1726.2 10 bp overlap

ZNF462 2 datasets

ChIP GM23338 ENCFF896CCA 251 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 227 bp overlap

ZNF528 2 datasets

Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap

Motif ES_0h ES_0h-ZNF528_MA1597.1 17 bp overlap

ZNF660 2 datasets

ChIP HEK293 ENCFF282RUS 372 bp overlap

ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 317 bp overlap

ZNF675 1 dataset

Motif ES_0h ES_0h-ZNF675_MA1714.2 19 bp overlap

Zfp335 2 datasets

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap

Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap

Zic2 2 datasets

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap

Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap