chr5 : 136,064,061 – 136,064,447

386 bp 70 TFs 0 linked genes

This 386 bp open chromatin element has no linked target genes and is bound by 70 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

70 transcription factors

ARID2 1 dataset

ChIP Aska-SS GSE108025.ARID2.Aska-SS 354 bp overlap

ARNT::HIF1A 1 dataset

Motif DE_24h DE_24h-ARNTHIF1A_MA0259.2 5 bp overlap

CTCF 5 datasets

ChIP C4-2B ENCFF821XVN 120 bp overlap

ChIP GM04648 GSE148179.CTCF.GM04648 159 bp overlap

ChIP HCT-116 GSE131606.CTCF.HCT-116 357 bp overlap

ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 160 bp overlap

ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 140 bp overlap

Cebpa 3 datasets

ChIP BLaER1 ENCFF274GAT 273 bp overlap

ChIP BLaER1 ENCFF335XTP 129 bp overlap

ChIP BLaER1 ENCFF460KDD 219 bp overlap

Crx 1 dataset

Motif DE_24h DE_24h-Crx_MA0467.3 6 bp overlap

DUX4 1 dataset

Motif DE_24h DE_24h-DUX4_MA0468.1 11 bp overlap

Dmbx1 1 dataset

Motif DE_24h DE_24h-Dmbx1_MA0883.2 10 bp overlap

GATA2 1 dataset

ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 133 bp overlap

GSC 1 dataset

Motif DE_24h DE_24h-GSC_MA0648.2 6 bp overlap

GSC2 1 dataset

Motif DE_24h DE_24h-GSC2_MA0891.2 6 bp overlap

HAND2 1 dataset

Motif DE_24h DE_24h-HAND2_MA1638.2 6 bp overlap

HIF1A 1 dataset

Motif DE_24h DE_24h-HIF1A_MA1106.2 6 bp overlap

HMGB2 1 dataset

ChIP IMR-90_proliferating GSE98245.HMGB2.IMR-90_proliferating 91 bp overlap

IFNA1 2 datasets

ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 84 bp overlap

ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 145 bp overlap

JUN 1 dataset

ChIP A549 ENCFF191QZG 185 bp overlap

JUND 1 dataset

ChIP A-549 ENCSR000BRF.JUND.A-549 146 bp overlap

MAFF 1 dataset

Motif DE_24h DE_24h-MAFF_MA0495.4 11 bp overlap

MED1 1 dataset

ChIP U-87MG GSE36354.MED1.U-87MG 385 bp overlap

MITF 7 datasets

ChIP 501-mel GSE137522.MITF.501-mel 194 bp overlap

ChIP 501-mel GSE61965.MITF.501-mel 79 bp overlap

ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 298 bp overlap

ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 189 bp overlap

ChIP 501-mel_K243R GSE137522.MITF.501-mel_K243R 148 bp overlap

ChIP K-562 ENCSR797SWM.MITF.K-562 167 bp overlap

ChIP K562 ENCFF731XJJ 185 bp overlap

Mafb 1 dataset

Motif DE_24h DE_24h-Mafb_MA0117.3 11 bp overlap

NKX2-3 1 dataset

Motif DE_24h DE_24h-NKX2-3_MA0672.2 8 bp overlap

NKX2-4 1 dataset

Motif DE_24h DE_24h-NKX2-4_MA2003.2 8 bp overlap

NKX2-8 1 dataset

Motif DE_24h DE_24h-NKX2-8_MA0673.2 8 bp overlap

NKX6-3 1 dataset

Motif DE_24h DE_24h-NKX6-3_MA1530.2 8 bp overlap

NR2E3 1 dataset

ChIP A549 ENCFF833WDR 200 bp overlap

OTX1 1 dataset

Motif DE_24h DE_24h-OTX1_MA0711.2 6 bp overlap

OTX2 1 dataset

Motif DE_24h DE_24h-OTX2_MA0712.3 7 bp overlap

PBX3 1 dataset

ChIP A549 ENCFF277EQG 94 bp overlap

PHOX2A 1 dataset

Motif DE_24h DE_24h-PHOX2A_MA0713.1 11 bp overlap

PHOX2B 1 dataset

Motif DE_24h DE_24h-PHOX2B_MA0681.3 12 bp overlap

PITX1 1 dataset

Motif DE_24h DE_24h-PITX1_MA0682.3 6 bp overlap

PITX2 1 dataset

Motif DE_24h DE_24h-PITX2_MA1547.2 8 bp overlap

PITX3 1 dataset

Motif DE_24h DE_24h-PITX3_MA0714.2 6 bp overlap

POU1F1 1 dataset

Motif DE_24h DE_24h-POU1F1_MA0784.3 14 bp overlap

POU2F1 1 dataset

Motif DE_24h DE_24h-POU2F1_MA0785.2 9 bp overlap

POU2F2 1 dataset

Motif DE_24h DE_24h-POU2F2_MA0507.3 13 bp overlap

POU2F3 1 dataset

Motif DE_24h DE_24h-POU2F3_MA0627.3 9 bp overlap

POU3F1 1 dataset

Motif DE_24h DE_24h-POU3F1_MA0786.2 10 bp overlap

POU3F2 1 dataset

Motif DE_24h DE_24h-POU3F2_MA0787.1 12 bp overlap

POU3F3 1 dataset

Motif DE_24h DE_24h-POU3F3_MA0788.1 13 bp overlap

POU3F4 1 dataset

Motif DE_24h DE_24h-POU3F4_MA0789.1 9 bp overlap

POU5F1 1 dataset

ChIP DE_D1 DED1-OCT4_Batch_II 386 bp overlap

POU5F1B 1 dataset

Motif DE_24h DE_24h-POU5F1B_MA0792.1 9 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 386 bp overlap

PPARG 1 dataset

Motif DE_24h DE_24h-PPARG_MA0066.2 19 bp overlap

PROP1 1 dataset

Motif DE_24h DE_24h-PROP1_MA0715.1 11 bp overlap

Prdm5 1 dataset

Motif DE_24h DE_24h-Prdm5_MA1999.2 11 bp overlap

RAD21 1 dataset

ChIP HCT-116 GSE131606.RAD21.HCT-116 341 bp overlap

RBM25 3 datasets

ChIP K-562 ENCSR791OZM.RBM25.K-562 299 bp overlap

ChIP K562 ENCFF248CGR 311 bp overlap

ChIP K562 ENCFF957ORK 311 bp overlap

RBM39 2 datasets

ChIP Hep-G2 GSE120104.RBM39.Hep-G2 344 bp overlap

ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 322 bp overlap

RHOXF1 1 dataset

Motif DE_24h DE_24h-RHOXF1_MA0719.2 6 bp overlap

RPA2_phospho 1 dataset

ChIP HeLa GSE108172.RPA2_phospho.HeLa 186 bp overlap

SIN3A 2 datasets

ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 165 bp overlap

ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 94 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 386 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 270 bp overlap

SMAD2_3 1 dataset

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 363 bp overlap

SMAD3 3 datasets

ChIP H69_4TGF GSE145250.SMAD3.H69_4TGF 220 bp overlap

ChIP HMLE_Doxycicline_TGFb GSE104760.SMAD3.HMLE_Doxycicline_TGFb 332 bp overlap

ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 147 bp overlap

SMARCC1 1 dataset

ChIP DE_D1 S15-DE-d1-BAF155-exp1 312 bp overlap

SMC1 1 dataset

ChIP DKO GSE131606.SMC1.DKO 379 bp overlap

SSRP1 2 datasets

ChIP HepG2 ENCFF540BLL 290 bp overlap

ChIP hiF-T GSE98758.SSRP1.hiF-T 350 bp overlap

SUPT5H 2 datasets

ChIP U2OS_siMYC GSE115365.SUPT5H.U2OS_siMYC 254 bp overlap

ChIP U2OS_siMYC_ON GSE115365.SUPT5H.U2OS_siMYC_ON 344 bp overlap

T 1 dataset

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 185 bp overlap

TCF12 1 dataset

ChIP A-549 ENCSR000BQQ.TCF12.A-549 386 bp overlap

TFE3 1 dataset

ChIP K562 ENCFF697ABG 158 bp overlap

USF1 7 datasets

ChIP A-549 ENCSR000BPV.USF1.A-549 82 bp overlap

ChIP A-549 ENCSR000BJB.USF1.A-549 76 bp overlap

ChIP A-549 ENCSR000BHX.USF1.A-549 53 bp overlap

ChIP H1 ENCFF090WVU 124 bp overlap

ChIP HepG2 ENCFF201JKA 166 bp overlap

ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 127 bp overlap

ChIP WA01 ENCSR000BIU.USF1.WA01 83 bp overlap

USF2 4 datasets

ChIP A-549 ENCSR563FBT.USF2.A-549 69 bp overlap

ChIP A549 ENCFF343KII 177 bp overlap

ChIP Hep-G2 GSE97661.USF2.Hep-G2 89 bp overlap

ChIP WTC11 ENCFF139JAW 186 bp overlap

ZBTB12 1 dataset

Motif DE_24h DE_24h-ZBTB12_MA1649.2 7 bp overlap

ZKSCAN5 1 dataset

Motif DE_24h DE_24h-ZKSCAN5_MA1652.2 9 bp overlap

ZNF582 1 dataset

Motif DE_24h DE_24h-ZNF582_MA1983.2 19 bp overlap

ZNF629 2 datasets

ChIP Hep-G2 ENCSR363ASY.ZNF629.Hep-G2 246 bp overlap

ChIP HepG2 ENCFF490FFQ 318 bp overlap

ZNF682 1 dataset

Motif DE_24h DE_24h-ZNF682_MA1599.2 11 bp overlap