chr5 : 129,399,108 – 129,399,507
399 bp 59 TFs 0 linked genes
This 399 bp open chromatin element has no linked target genes and is bound by 59 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:129,394,108 – 129,404,507
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 71 bp overlap
BHLHE41 2 datasets
Motif DE_12h DE_12h-BHLHE41_MA0636.1 10 bp overlap
Motif ES_0h ES_0h-BHLHE41_MA0636.1 10 bp overlap
BRD4 4 datasets
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 399 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.BRD4.MCF-7_ARID1A-KO_4-OHT 196 bp overlap
ChIP MCF-7_parental GSE123284.BRD4.MCF-7_parental 374 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 399 bp overlap
CTCF 1 dataset
ChIP neural crest cell ENCFF182LWK 146 bp overlap
ERF::SREBF2 2 datasets
Motif DE_12h DE_12h-ERFSREBF2_MA1939.2 16 bp overlap
Motif ES_0h ES_0h-ERFSREBF2_MA1939.2 16 bp overlap
GLIS3 2 datasets
Motif DE_12h DE_12h-GLIS3_MA0737.1 14 bp overlap
Motif ES_0h ES_0h-GLIS3_MA0737.1 14 bp overlap
Gli1 2 datasets
Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap
Motif ES_0h ES_0h-Gli1_MA1990.2 10 bp overlap
LIN54 1 dataset
Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap
MAFK 2 datasets
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
Motif ES_0h ES_0h-MAFK_MA0496.4 10 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 244 bp overlap
MEIS1 4 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MEIS2 2 datasets
Motif DE_12h DE_12h-MEIS2_MA0774.1 8 bp overlap
Motif ES_0h ES_0h-MEIS2_MA0774.1 8 bp overlap
MITF 5 datasets
ChIP 501-mel GSE137522.MITF.501-mel 307 bp overlap
ChIP 501-mel GSE61965.MITF.501-mel 184 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 295 bp overlap
Motif DE_12h DE_12h-MITF_MA0620.4 10 bp overlap
Motif ES_0h ES_0h-MITF_MA0620.4 10 bp overlap
MSC 2 datasets
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
Motif ES_0h ES_0h-MSC_MA0665.1 10 bp overlap
MXI1 2 datasets
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 181 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 67 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 153 bp overlap
NFIA 2 datasets
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
Motif ES_0h ES_0h-NFIA_MA0670.2 6 bp overlap
NFIX 2 datasets
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
Motif ES_0h ES_0h-NFIX_MA0671.2 6 bp overlap
Nr2F6 2 datasets
Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap
Motif ES_0h ES_0h-Nr2F6_MA0728.1 15 bp overlap
Nr2e1 2 datasets
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
Motif ES_0h ES_0h-Nr2e1_MA0676.1 9 bp overlap
OSR1 2 datasets
Motif DE_12h DE_12h-OSR1_MA1542.2 8 bp overlap
Motif ES_0h ES_0h-OSR1_MA1542.2 8 bp overlap
OSR2 2 datasets
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
Motif ES_0h ES_0h-OSR2_MA1646.2 8 bp overlap
PBX3 2 datasets
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
Motif ES_0h ES_0h-PBX3_MA1114.2 11 bp overlap
PKNOX1 6 datasets
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
Motif ES_0h ES_0h-PKNOX1_MA0782.3 10 bp overlap
ChIP HEK293T ENCFF174WDB 347 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 309 bp overlap
ChIP MCF-7 ENCFF116OCS 279 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 328 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 270 bp overlap
PPARA::RXRA 2 datasets
Motif DE_12h DE_12h-PPARARXRA_MA1148.2 17 bp overlap
Motif ES_0h ES_0h-PPARARXRA_MA1148.2 17 bp overlap
PPARD 2 datasets
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
Motif ES_0h ES_0h-PPARD_MA1550.2 14 bp overlap
PRDM1 2 datasets
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
Motif ES_0h ES_0h-PRDM1_MA0508.4 7 bp overlap
Pparg::Rxra 2 datasets
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
Motif ES_0h ES_0h-PpargRxra_MA0065.3 13 bp overlap
Prdm15 1 dataset
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
RARA 2 datasets
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
Motif ES_0h ES_0h-RARA_MA0729.1 18 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 207 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 73 bp overlap
SOX10 2 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 198 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 105 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 140 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SREBF1 2 datasets
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
Motif ES_0h ES_0h-SREBF1_MA0595.1 10 bp overlap
SREBF2 4 datasets
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
Motif DE_12h DE_12h-SREBF2_MA0828.3 10 bp overlap
Motif ES_0h ES_0h-SREBF2_MA0596.1 10 bp overlap
Motif ES_0h ES_0h-SREBF2_MA0828.3 10 bp overlap
TBX3 2 datasets
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
Motif ES_0h ES_0h-TBX3_MA1566.3 9 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 226 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 67 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 323 bp overlap
TFE3 2 datasets
Motif DE_12h DE_12h-TFE3_MA0831.3 10 bp overlap
Motif ES_0h ES_0h-TFE3_MA0831.3 10 bp overlap
TFEB 2 datasets
Motif DE_12h DE_12h-TFEB_MA0692.2 8 bp overlap
Motif ES_0h ES_0h-TFEB_MA0692.2 8 bp overlap
TFEC 2 datasets
Motif DE_12h DE_12h-TFEC_MA0871.3 8 bp overlap
Motif ES_0h ES_0h-TFEC_MA0871.3 8 bp overlap
THAP1 2 datasets
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
Motif ES_0h ES_0h-THAP1_MA0597.3 8 bp overlap
TOE1 1 dataset
ChIP MCF-7 ENCFF544WQF 243 bp overlap
Tcf21 2 datasets
Motif DE_12h DE_12h-Tcf21_MA0832.2 10 bp overlap
Motif ES_0h ES_0h-Tcf21_MA0832.2 10 bp overlap
USF1 6 datasets
Motif DE_12h DE_12h-USF1_MA0093.4 10 bp overlap
Motif ES_0h ES_0h-USF1_MA0093.4 10 bp overlap
ChIP H1 ENCFF090WVU 193 bp overlap
ChIP Ishikawa ENCSR000BSX.USF1.Ishikawa 131 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 262 bp overlap
ChIP WTC11 ENCFF699QGS 325 bp overlap
USF2 5 datasets
Motif DE_12h DE_12h-USF2_MA0526.5 10 bp overlap
Motif ES_0h ES_0h-USF2_MA0526.5 10 bp overlap
ChIP H1 ENCFF434EDF 253 bp overlap
ChIP WA01 ENCSR000ECD.USF2.WA01 205 bp overlap
ChIP WTC11 ENCFF139JAW 193 bp overlap
ZFP69B 1 dataset
ChIP HEK293T GSE78099.ZFP69B.HEK293T 121 bp overlap
ZNF140 2 datasets
Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap
Motif ES_0h ES_0h-ZNF140_MA1589.2 19 bp overlap
ZNF282 2 datasets
Motif DE_12h DE_12h-ZNF282_MA1154.2 15 bp overlap
Motif ES_0h ES_0h-ZNF282_MA1154.2 15 bp overlap
ZNF382 2 datasets
Motif DE_12h DE_12h-ZNF382_MA1594.1 24 bp overlap
Motif ES_0h ES_0h-ZNF382_MA1594.1 24 bp overlap
ZNF418 2 datasets
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
Motif ES_0h ES_0h-ZNF418_MA1980.1 15 bp overlap
ZSCAN31 2 datasets
Motif DE_12h DE_12h-ZSCAN31_MA1722.2 18 bp overlap
Motif ES_0h ES_0h-ZSCAN31_MA1722.2 18 bp overlap
Zfp335 1 dataset
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap
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