chr5 : 55,406,222 55,406,887
665 bp 40 TFs 5 linked genes
This 665 bp open chromatin element is linked to 5 target genes and is bound by 40 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
MTREX 98.5 kb Distal Multiome
DHX29 98.8 kb Distal Multiome
PLPP1 128.5 kb Distal Multiome
CCNO-DT 172.6 kb Distal Multiome
GPX8 246.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:55,401,222 – 55,411,887
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 344 bp overlap
BRD3 1 dataset
ChIP HUVEC-C GSE60171.BRD3.HUVEC-C 224 bp overlap
BRD4 3 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 426 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 346 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 230 bp overlap
CHD8 1 dataset
ChIP T-47D GSE62428.CHD8.T-47D 160 bp overlap
CTCF 18 datasets
ChIP BJ ENCSR000DQI.CTCF.BJ 134 bp overlap
ChIP C4-2B ENCFF821XVN 144 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 59 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 68 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 55 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 179 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 107 bp overlap
ChIP LNCaP ENCSR315NAC.CTCF.LNCaP 83 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 87 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 79 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 57 bp overlap
ChIP Panc1 ENCFF056JQX 79 bp overlap
ChIP RWPE2 ENCFF911IEE 51 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 50 bp overlap
ChIP chondrocyte ENCFF134ORZ 117 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 62 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 376 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 156 bp overlap
ETS1 2 datasets
ChIP HUVEC-C GSE109625.ETS1.HUVEC-C 186 bp overlap
ChIP HUVEC-C GSE93030.ETS1.HUVEC-C 186 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 81 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 665 bp overlap
ChIP DE DE-FOXA2-2 665 bp overlap
FOXN3 1 dataset
Motif DE_60h DE_60h-FOXN3_MA1489.1 8 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 629 bp overlap
ChIP DE DE-GATA4-2 665 bp overlap
ChIP foregut GSE117136.GATA4.foregut 357 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 640 bp overlap
ChIP DE DE-GATA6-2 665 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 302 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 295 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 326 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 281 bp overlap
NFATC3 1 dataset
Motif DE_60h DE_60h-NFATC3_MA0625.3 6 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BHF.NR3C1.A-549 159 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 127 bp overlap
Nfatc1 1 dataset
Motif DE_60h DE_60h-Nfatc1_MA0624.3 6 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 81 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 345 bp overlap
RAD21 3 datasets
ChIP HCT-116 GSE131606.RAD21.HCT-116 119 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 95 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 239 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 395 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 389 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 72 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 170 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 219 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 625 bp overlap
SOX2 1 dataset
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 370 bp overlap
SPI1 1 dataset
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 196 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3_SHSPIB GSE56857.SPIB.OCI-Ly3_SHSPIB 183 bp overlap
TFAP2A 1 dataset
Motif DE_60h DE_60h-TFAP2A_MA0003.5 9 bp overlap
TFAP2C 1 dataset
Motif DE_60h DE_60h-TFAP2C_MA0814.3 9 bp overlap
ZBTB6 1 dataset
Motif DE_60h DE_60h-ZBTB6_MA1581.2 9 bp overlap
ZNF211 1 dataset
Motif DE_60h DE_60h-ZNF211_MA1974.2 10 bp overlap
ZNF274 1 dataset
Motif DE_60h DE_60h-ZNF274_MA1592.2 12 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 176 bp overlap
ZNF770 1 dataset
Motif DE_60h DE_60h-ZNF770_MA2099.1 8 bp overlap