chr4 : 136,803,454 – 136,803,765

311 bp 58 TFs 0 linked genes

This 311 bp open chromatin element has no linked target genes and is bound by 58 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

58 transcription factors

Ahr::Arnt 1 dataset

Motif ES_0h ES_0h-AhrArnt_MA0006.2 5 bp overlap

BCL11A 1 dataset

ChIP WA01 ENCSR000BIP.BCL11A.WA01 140 bp overlap

BCOR 1 dataset

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 204 bp overlap

BRD4 1 dataset

ChIP hESC GSE33281.BRD4.hESC 61 bp overlap

CHD7 3 datasets

ChIP H1 ENCFF126NLU 311 bp overlap

ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 311 bp overlap

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 311 bp overlap

CTCF 1 dataset

Motif ES_0h ES_0h-CTCF_MA1930.2 33 bp overlap

ELF3 2 datasets

ChIP PDAC GSE64557.ELF3.PDAC 311 bp overlap

ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 311 bp overlap

EP300 3 datasets

ChIP H1 ENCFF927IYK 251 bp overlap

ChIP WA01 ENCSR000BKK.EP300.WA01 143 bp overlap

ChIP fibroblast_senescent GSE106146.EP300.fibroblast_senescent 120 bp overlap

ETV6 1 dataset

ChIP WTC11 ENCFF812SCD 311 bp overlap

FLI1 1 dataset

ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 270 bp overlap

FOSL1::JUN 1 dataset

Motif ES_0h ES_0h-FOSL1JUN_MA1128.2 9 bp overlap

FOSL1::JUNB 1 dataset

Motif ES_0h ES_0h-FOSL1JUNB_MA1137.2 9 bp overlap

FOSL2 2 datasets

ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 196 bp overlap

ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 231 bp overlap

FOSL2::JUNB 1 dataset

Motif ES_0h ES_0h-FOSL2JUNB_MA1138.2 9 bp overlap

FOXA1 1 dataset

ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 231 bp overlap

FOXA2 1 dataset

ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 208 bp overlap

FOXP1 1 dataset

ChIP H9 GSE31006.FOXP1.H9 190 bp overlap

FOXP4 1 dataset

ChIP WTC11 ENCFF708TAF 311 bp overlap

HNF1A 1 dataset

Motif ES_0h ES_0h-HNF1A_MA0046.3 13 bp overlap

HNF1B 1 dataset

Motif ES_0h ES_0h-HNF1B_MA0153.2 13 bp overlap

JUN 4 datasets

ChIP DE_D2 S02-DE-d2-JUN-exp1 311 bp overlap

ChIP ESC S24-ESC-d0-JUN-exp1 311 bp overlap

ChIP ESC S34-ESC-d0-JUN-exp2 244 bp overlap

ChIP HUES-8 GSE109524.JUN.HUES-8 311 bp overlap

Lhx3 1 dataset

Motif ES_0h ES_0h-Lhx3_MA0135.2 12 bp overlap

MEIS1 2 datasets

Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap

Motif ES_0h ES_0h-MEIS1_MA1639.2 9 bp overlap

MEIS2 1 dataset

Motif ES_0h ES_0h-MEIS2_MA1640.2 9 bp overlap

MYCN 1 dataset

ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 158 bp overlap

NANOG 10 datasets

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 152 bp overlap

ChIP H1 ENCFF747ZPQ 241 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 311 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 311 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 214 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 311 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 311 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 244 bp overlap

ChIP hESC GSE18292.NANOG.hESC 159 bp overlap

ChIP hESC GSE20650.NANOG.hESC 156 bp overlap

NFKB2 1 dataset

Motif ES_0h ES_0h-NFKB2_MA0778.2 11 bp overlap

ONECUT1 2 datasets

ChIP H9 ERP004206.ONECUT1.H9 70 bp overlap

ChIP H9 ERP004206.ONECUT1.H9 75 bp overlap

PBX2 1 dataset

Motif ES_0h ES_0h-PBX2_MA1113.3 9 bp overlap

PDX1 4 datasets

ChIP hiPSC GSE125768.PDX1.hiPSC 262 bp overlap

ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 218 bp overlap

ChIP islet ERP001456.PDX1.islet 120 bp overlap

ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 259 bp overlap

POU2F2 1 dataset

ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 149 bp overlap

POU5F1 3 datasets

ChIP BG03 GSE21614.POU5F1.BG03 176 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 311 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 185 bp overlap

PRDM14 1 dataset

ChIP NCCIT GSE71675.PRDM14.NCCIT 188 bp overlap

PRDM9 1 dataset

Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap

RARA 3 datasets

Motif ES_0h ES_0h-RARA_MA0730.1 17 bp overlap

ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 252 bp overlap

ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 311 bp overlap

RARA::RXRG 1 dataset

Motif ES_0h ES_0h-RARARXRG_MA1149.2 17 bp overlap

RELA 1 dataset

ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 139 bp overlap

Rarb 1 dataset

Motif ES_0h ES_0h-Rarb_MA0858.1 17 bp overlap

SMAD3 2 datasets

ChIP BG03 GSE21614.SMAD3.BG03 256 bp overlap

ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 201 bp overlap

SMARCA2 7 datasets

ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 285 bp overlap

ChIP NPC_K755R-pos_ab GSE122631.SMARCA2.NPC_K755R-pos_ab 207 bp overlap

ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 305 bp overlap

ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 305 bp overlap

ChIP NPC_R1159Q GSE122631.SMARCA2.NPC_R1159Q 297 bp overlap

ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 311 bp overlap

ChIP NPC_R1159Q_ab GSE122631.SMARCA2.NPC_R1159Q_ab 280 bp overlap

SMARCA4 7 datasets

ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 59 bp overlap

ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 311 bp overlap

ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 311 bp overlap

ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 311 bp overlap

ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 220 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 311 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 311 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 235 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 252 bp overlap

SMARCC1 3 datasets

ChIP ESC S25-ESC-d0-BAF155-exp1 311 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 311 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 277 bp overlap

SOX2 3 datasets

ChIP HNSC GSE69479.SOX2.HNSC 311 bp overlap

ChIP hESC GSE18292.SOX2.hESC 97 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 311 bp overlap

SP1 1 dataset

ChIP H1 ENCFF263FUH 251 bp overlap

Stat5a::Stat5b 1 dataset

Motif ES_0h ES_0h-Stat5aStat5b_MA0519.2 9 bp overlap

Stat6 1 dataset

Motif ES_0h ES_0h-Stat6_MA0520.2 10 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 214 bp overlap

TCF3 1 dataset

ChIP NPC GSE154479.TCF3.NPC 224 bp overlap

TFAP2C 1 dataset

ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 131 bp overlap

TP53 1 dataset

ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 174 bp overlap

VEZF1 2 datasets

Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap

Motif ES_0h ES_0h-VEZF1_MA1578.2 6 bp overlap

ZFP14 1 dataset

Motif ES_0h ES_0h-ZFP14_MA1972.1 15 bp overlap

ZNF257 1 dataset

Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap

ZNF281 2 datasets

Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap

Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap

ZNF35 2 datasets

Motif DE_12h DE_12h-ZNF35_MA2333.1 7 bp overlap

Motif ES_0h ES_0h-ZNF35_MA2333.1 7 bp overlap

ZNF768 1 dataset

Motif ES_0h ES_0h-ZNF768_MA1731.2 9 bp overlap

ZSCAN4 1 dataset

Motif ES_0h ES_0h-ZSCAN4_MA1155.1 15 bp overlap